Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2856 and DvMF_2857 are separated by 3 nucleotides DvMF_2857 and DvMF_2858 are separated by 105 nucleotides DvMF_2858 and DvMF_2859 are separated by 178 nucleotides
DvMF_2856: DvMF_2856 - NADPH-dependent FMN reductase (RefSeq), at 3,608,395 to 3,609,027
_2856
DvMF_2857: DvMF_2857 - phosphoribosyltransferase (RefSeq), at 3,609,031 to 3,609,855
_2857
DvMF_2858: DvMF_2858 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,609,961 to 3,610,698
_2858
DvMF_2859: DvMF_2859 - hypothetical protein (RefSeq), at 3,610,877 to 3,611,665
_2859
Position (kb)
3609
3610
3611 Strain fitness (log2 ratio)
-2
-1
0
1 at 3609.050 kb on + strand at 3609.336 kb on + strand, within DvMF_2857 at 3609.366 kb on + strand, within DvMF_2857 at 3609.366 kb on + strand, within DvMF_2857 at 3609.371 kb on + strand, within DvMF_2857 at 3609.550 kb on - strand, within DvMF_2857 at 3609.925 kb on + strand at 3610.007 kb on + strand at 3610.136 kb on - strand, within DvMF_2858 at 3610.219 kb on + strand, within DvMF_2858 at 3610.414 kb on - strand, within DvMF_2858 at 3610.469 kb on - strand, within DvMF_2858 at 3610.504 kb on - strand, within DvMF_2858 at 3610.728 kb on - strand at 3610.770 kb on - strand at 3611.437 kb on - strand, within DvMF_2859
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 3,609,050 + +0.4 3,609,336 + DvMF_2857 0.37 -0.2 3,609,366 + DvMF_2857 0.41 -0.6 3,609,366 + DvMF_2857 0.41 -1.2 3,609,371 + DvMF_2857 0.41 +0.7 3,609,550 - DvMF_2857 0.63 +0.0 3,609,925 + -1.2 3,610,007 + -2.1 3,610,136 - DvMF_2858 0.24 -0.8 3,610,219 + DvMF_2858 0.35 -0.3 3,610,414 - DvMF_2858 0.61 +0.7 3,610,469 - DvMF_2858 0.69 +1.7 3,610,504 - DvMF_2858 0.74 -0.6 3,610,728 - -1.5 3,610,770 - -0.3 3,611,437 - DvMF_2859 0.71 -1.5
Or see this region's nucleotide sequence