Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2784

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2783 and DvMF_2784 are separated by 178 nucleotidesDvMF_2784 and DvMF_2785 are separated by 536 nucleotides DvMF_2783: DvMF_2783 - acetate/CoA ligase (RefSeq), at 3,521,097 to 3,523,052 _2783 DvMF_2784: DvMF_2784 - two component transcriptional regulator, LytTR family (RefSeq), at 3,523,231 to 3,524,307 _2784 DvMF_2785: DvMF_2785 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,524,844 to 3,526,868 _2785 Position (kb) 3523 3524 3525Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3522.518 kb on - strand, within DvMF_2783at 3522.615 kb on + strand, within DvMF_2783at 3522.746 kb on - strand, within DvMF_2783at 3522.970 kb on + strandat 3522.973 kb on - strandat 3523.056 kb on - strandat 3523.170 kb on + strandat 3523.537 kb on + strand, within DvMF_2784at 3523.545 kb on - strand, within DvMF_2784at 3523.594 kb on - strand, within DvMF_2784at 3523.611 kb on - strand, within DvMF_2784at 3523.657 kb on + strand, within DvMF_2784at 3523.673 kb on - strand, within DvMF_2784at 3523.877 kb on + strand, within DvMF_2784at 3523.914 kb on + strand, within DvMF_2784at 3523.980 kb on + strand, within DvMF_2784at 3524.019 kb on + strand, within DvMF_2784at 3524.169 kb on - strand, within DvMF_2784at 3524.418 kb on + strandat 3524.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,522,518 - DvMF_2783 0.73 -2.5
3,522,615 + DvMF_2783 0.78 -0.4
3,522,746 - DvMF_2783 0.84 -1.4
3,522,970 + -2.3
3,522,973 - -2.3
3,523,056 - -0.9
3,523,170 + -0.2
3,523,537 + DvMF_2784 0.28 -2.9
3,523,545 - DvMF_2784 0.29 -3.5
3,523,594 - DvMF_2784 0.34 -2.5
3,523,611 - DvMF_2784 0.35 -2.4
3,523,657 + DvMF_2784 0.40 -4.7
3,523,673 - DvMF_2784 0.41 -3.2
3,523,877 + DvMF_2784 0.60 -2.1
3,523,914 + DvMF_2784 0.63 -2.6
3,523,980 + DvMF_2784 0.70 -3.7
3,524,019 + DvMF_2784 0.73 -2.8
3,524,169 - DvMF_2784 0.87 +0.4
3,524,418 + +0.1
3,524,722 + +0.4

Or see this region's nucleotide sequence