Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2648

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2646 and DvMF_2647 are separated by 312 nucleotidesDvMF_2647 and DvMF_2648 are separated by 272 nucleotidesDvMF_2648 and DvMF_2649 are separated by 9 nucleotidesDvMF_2649 and DvMF_2650 are separated by 178 nucleotides DvMF_2646: DvMF_2646 - PHP domain protein (RefSeq), at 3,348,664 to 3,349,548 _2646 DvMF_2647: DvMF_2647 - protein of unknown function DUF343 (RefSeq), at 3,349,861 to 3,350,061 _2647 DvMF_2648: DvMF_2648 - heat shock protein Hsp20 (RefSeq), at 3,350,334 to 3,350,747 _2648 DvMF_2649: DvMF_2649 - heat shock protein Hsp20 (RefSeq), at 3,350,757 to 3,351,314 _2649 DvMF_2650: DvMF_2650 - phosphodiesterase (RefSeq), at 3,351,493 to 3,352,041 _2650 Position (kb) 3350 3351Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3349.405 kb on + strand, within DvMF_2646at 3349.579 kb on + strandat 3349.587 kb on - strandat 3349.679 kb on + strandat 3349.791 kb on - strandat 3349.846 kb on + strandat 3350.054 kb on - strandat 3350.140 kb on + strandat 3350.186 kb on + strandat 3350.261 kb on + strandat 3350.505 kb on - strand, within DvMF_2648at 3351.132 kb on - strand, within DvMF_2649at 3351.397 kb on - strandat 3351.432 kb on + strandat 3351.720 kb on + strand, within DvMF_2650at 3351.726 kb on - strand, within DvMF_2650

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,349,405 + DvMF_2646 0.84 -0.9
3,349,579 + +2.4
3,349,587 - -0.4
3,349,679 + -0.1
3,349,791 - -0.2
3,349,846 + -0.7
3,350,054 - -0.6
3,350,140 + -0.3
3,350,186 + -3.7
3,350,261 + -0.1
3,350,505 - DvMF_2648 0.41 -2.2
3,351,132 - DvMF_2649 0.67 -2.9
3,351,397 - -0.6
3,351,432 + -0.6
3,351,720 + DvMF_2650 0.41 -0.4
3,351,726 - DvMF_2650 0.42 -0.7

Or see this region's nucleotide sequence