Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2547

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2546 and DvMF_2547 are separated by 411 nucleotidesDvMF_2547 and DvMF_2548 are separated by 52 nucleotides DvMF_2546: DvMF_2546 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,217,923 to 3,218,381 _2546 DvMF_2547: DvMF_2547 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,218,793 to 3,219,587 _2547 DvMF_2548: DvMF_2548 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,219,640 to 3,222,225 _2548 Position (kb) 3218 3219 3220Strain fitness (log2 ratio) -1 0 1 2at 3217.888 kb on - strandat 3217.969 kb on + strand, within DvMF_2546at 3217.987 kb on - strand, within DvMF_2546at 3218.227 kb on + strand, within DvMF_2546at 3218.303 kb on + strand, within DvMF_2546at 3218.338 kb on - strandat 3218.893 kb on + strand, within DvMF_2547at 3218.969 kb on - strand, within DvMF_2547at 3218.988 kb on + strand, within DvMF_2547at 3219.011 kb on - strand, within DvMF_2547at 3219.486 kb on - strand, within DvMF_2547at 3219.567 kb on + strandat 3219.699 kb on + strandat 3219.749 kb on + strandat 3219.814 kb on - strandat 3220.204 kb on - strand, within DvMF_2548at 3220.249 kb on - strand, within DvMF_2548at 3220.259 kb on + strand, within DvMF_2548at 3220.259 kb on + strand, within DvMF_2548at 3220.259 kb on + strand, within DvMF_2548at 3220.267 kb on - strand, within DvMF_2548at 3220.267 kb on - strand, within DvMF_2548at 3220.267 kb on - strand, within DvMF_2548at 3220.537 kb on - strand, within DvMF_2548

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,217,888 - -0.5
3,217,969 + DvMF_2546 0.10 -0.6
3,217,987 - DvMF_2546 0.14 -0.5
3,218,227 + DvMF_2546 0.66 -0.5
3,218,303 + DvMF_2546 0.83 -0.6
3,218,338 - -0.7
3,218,893 + DvMF_2547 0.13 -0.0
3,218,969 - DvMF_2547 0.22 -0.4
3,218,988 + DvMF_2547 0.25 -0.3
3,219,011 - DvMF_2547 0.27 -0.5
3,219,486 - DvMF_2547 0.87 -0.4
3,219,567 + -0.6
3,219,699 + -1.0
3,219,749 + +2.2
3,219,814 - -0.0
3,220,204 - DvMF_2548 0.22 -0.1
3,220,249 - DvMF_2548 0.24 -0.3
3,220,259 + DvMF_2548 0.24 -1.1
3,220,259 + DvMF_2548 0.24 -1.5
3,220,259 + DvMF_2548 0.24 -0.3
3,220,267 - DvMF_2548 0.24 -0.2
3,220,267 - DvMF_2548 0.24 -0.2
3,220,267 - DvMF_2548 0.24 -1.2
3,220,537 - DvMF_2548 0.35 -0.2

Or see this region's nucleotide sequence