Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2525 and DvMF_2526 are separated by 12 nucleotides DvMF_2526 and DvMF_2527 overlap by 25 nucleotides DvMF_2527 and DvMF_2528 are separated by 166 nucleotides
DvMF_2525: DvMF_2525 - flagellar hook-associated protein 3 (RefSeq), at 3,184,345 to 3,185,868
_2525
DvMF_2526: DvMF_2526 - carbon storage regulator, CsrA (RefSeq), at 3,185,881 to 3,186,120
_2526
DvMF_2527: DvMF_2527 - flagellar assembly protein FliW (RefSeq), at 3,186,096 to 3,186,647
_2527
DvMF_2528: DvMF_2528 - transcriptional regulator, NifA subfamily, Fis Family (RefSeq), at 3,186,814 to 3,188,553
_2528
Position (kb)
3185
3186
3187 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3185.111 kb on - strand, within DvMF_2525 at 3185.483 kb on + strand, within DvMF_2525 at 3185.500 kb on + strand, within DvMF_2525 at 3185.747 kb on + strand at 3185.967 kb on + strand, within DvMF_2526 at 3186.155 kb on + strand, within DvMF_2527 at 3186.327 kb on - strand, within DvMF_2527 at 3186.818 kb on - strand at 3186.848 kb on + strand at 3186.922 kb on + strand at 3186.922 kb on + strand at 3186.924 kb on + strand at 3186.930 kb on - strand at 3186.984 kb on + strand at 3186.984 kb on + strand at 3186.986 kb on + strand at 3186.992 kb on - strand, within DvMF_2528 at 3186.994 kb on - strand, within DvMF_2528 at 3186.994 kb on - strand, within DvMF_2528 at 3187.085 kb on + strand, within DvMF_2528
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 3,185,111 - DvMF_2525 0.50 -1.7 3,185,483 + DvMF_2525 0.75 -2.0 3,185,500 + DvMF_2525 0.76 -1.4 3,185,747 + -3.2 3,185,967 + DvMF_2526 0.36 -0.0 3,186,155 + DvMF_2527 0.11 -1.2 3,186,327 - DvMF_2527 0.42 -0.3 3,186,818 - +0.2 3,186,848 + -0.8 3,186,922 + -1.4 3,186,922 + -2.5 3,186,924 + -0.2 3,186,930 - -0.6 3,186,984 + -0.2 3,186,984 + +2.1 3,186,986 + +0.3 3,186,992 - DvMF_2528 0.10 -0.4 3,186,994 - DvMF_2528 0.10 -0.0 3,186,994 - DvMF_2528 0.10 -0.6 3,187,085 + DvMF_2528 0.16 -0.3
Or see this region's nucleotide sequence