Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2526

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2525 and DvMF_2526 are separated by 12 nucleotidesDvMF_2526 and DvMF_2527 overlap by 25 nucleotidesDvMF_2527 and DvMF_2528 are separated by 166 nucleotides DvMF_2525: DvMF_2525 - flagellar hook-associated protein 3 (RefSeq), at 3,184,345 to 3,185,868 _2525 DvMF_2526: DvMF_2526 - carbon storage regulator, CsrA (RefSeq), at 3,185,881 to 3,186,120 _2526 DvMF_2527: DvMF_2527 - flagellar assembly protein FliW (RefSeq), at 3,186,096 to 3,186,647 _2527 DvMF_2528: DvMF_2528 - transcriptional regulator, NifA subfamily, Fis Family (RefSeq), at 3,186,814 to 3,188,553 _2528 Position (kb) 3185 3186 3187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3185.111 kb on - strand, within DvMF_2525at 3185.483 kb on + strand, within DvMF_2525at 3185.500 kb on + strand, within DvMF_2525at 3185.747 kb on + strandat 3185.967 kb on + strand, within DvMF_2526at 3186.155 kb on + strand, within DvMF_2527at 3186.327 kb on - strand, within DvMF_2527at 3186.818 kb on - strandat 3186.848 kb on + strandat 3186.922 kb on + strandat 3186.922 kb on + strandat 3186.924 kb on + strandat 3186.930 kb on - strandat 3186.984 kb on + strandat 3186.984 kb on + strandat 3186.986 kb on + strandat 3186.992 kb on - strand, within DvMF_2528at 3186.994 kb on - strand, within DvMF_2528at 3186.994 kb on - strand, within DvMF_2528at 3187.085 kb on + strand, within DvMF_2528

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,185,111 - DvMF_2525 0.50 -1.7
3,185,483 + DvMF_2525 0.75 -2.0
3,185,500 + DvMF_2525 0.76 -1.4
3,185,747 + -3.2
3,185,967 + DvMF_2526 0.36 -0.0
3,186,155 + DvMF_2527 0.11 -1.2
3,186,327 - DvMF_2527 0.42 -0.3
3,186,818 - +0.2
3,186,848 + -0.8
3,186,922 + -1.4
3,186,922 + -2.5
3,186,924 + -0.2
3,186,930 - -0.6
3,186,984 + -0.2
3,186,984 + +2.1
3,186,986 + +0.3
3,186,992 - DvMF_2528 0.10 -0.4
3,186,994 - DvMF_2528 0.10 -0.0
3,186,994 - DvMF_2528 0.10 -0.6
3,187,085 + DvMF_2528 0.16 -0.3

Or see this region's nucleotide sequence