Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2520

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2519 and flgH are separated by 57 nucleotidesflgH and flgI are separated by 843 nucleotides DvMF_2519: DvMF_2519 - flagella basal body P-ring formation protein FlgA (RefSeq), at 3,175,941 to 3,176,981 _2519 DvMF_2520: flgH - flagellar basal body L-ring protein (RefSeq), at 3,177,039 to 3,177,755 flgH DvMF_2521: flgI - flagellar basal body P-ring protein (RefSeq), at 3,178,599 to 3,179,723 flgI Position (kb) 3177 3178Strain fitness (log2 ratio) -3 -2 -1 0 1at 3176.168 kb on + strand, within DvMF_2519at 3176.189 kb on + strand, within DvMF_2519at 3176.371 kb on - strand, within DvMF_2519at 3176.834 kb on + strand, within DvMF_2519at 3176.867 kb on + strand, within DvMF_2519at 3176.944 kb on - strandat 3177.000 kb on + strandat 3177.143 kb on + strand, within flgHat 3177.336 kb on - strand, within flgHat 3177.405 kb on + strand, within flgHat 3177.748 kb on - strandat 3177.921 kb on - strandat 3178.297 kb on + strandat 3178.400 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,176,168 + DvMF_2519 0.22 -1.9
3,176,189 + DvMF_2519 0.24 -1.7
3,176,371 - DvMF_2519 0.41 -0.8
3,176,834 + DvMF_2519 0.86 -2.8
3,176,867 + DvMF_2519 0.89 -1.9
3,176,944 - -1.8
3,177,000 + -0.6
3,177,143 + flgH DvMF_2520 0.15 -2.1
3,177,336 - flgH DvMF_2520 0.41 -1.9
3,177,405 + flgH DvMF_2520 0.51 -2.4
3,177,748 - -1.8
3,177,921 - -0.1
3,178,297 + -3.0
3,178,400 + -0.6

Or see this region's nucleotide sequence