Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2519

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgG and DvMF_2519 are separated by 201 nucleotidesDvMF_2519 and flgH are separated by 57 nucleotides DvMF_2518: flgG - flagellar basal body rod protein FlgG (RefSeq), at 3,174,957 to 3,175,739 flgG DvMF_2519: DvMF_2519 - flagella basal body P-ring formation protein FlgA (RefSeq), at 3,175,941 to 3,176,981 _2519 DvMF_2520: flgH - flagellar basal body L-ring protein (RefSeq), at 3,177,039 to 3,177,755 flgH Position (kb) 3175 3176 3177Strain fitness (log2 ratio) -3 -2 -1 0 1at 3175.194 kb on + strand, within flgGat 3175.290 kb on + strand, within flgGat 3175.436 kb on - strand, within flgGat 3175.554 kb on + strand, within flgGat 3175.601 kb on - strand, within flgGat 3175.887 kb on + strandat 3175.901 kb on - strandat 3176.013 kb on + strandat 3176.168 kb on + strand, within DvMF_2519at 3176.189 kb on + strand, within DvMF_2519at 3176.371 kb on - strand, within DvMF_2519at 3176.834 kb on + strand, within DvMF_2519at 3176.867 kb on + strand, within DvMF_2519at 3176.944 kb on - strandat 3177.000 kb on + strandat 3177.143 kb on + strand, within flgHat 3177.336 kb on - strand, within flgHat 3177.405 kb on + strand, within flgHat 3177.748 kb on - strandat 3177.921 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,175,194 + flgG DvMF_2518 0.30 -1.2
3,175,290 + flgG DvMF_2518 0.43 -0.9
3,175,436 - flgG DvMF_2518 0.61 -1.5
3,175,554 + flgG DvMF_2518 0.76 -1.0
3,175,601 - flgG DvMF_2518 0.82 -0.9
3,175,887 + -0.8
3,175,901 - -0.1
3,176,013 + -1.7
3,176,168 + DvMF_2519 0.22 -1.9
3,176,189 + DvMF_2519 0.24 -1.7
3,176,371 - DvMF_2519 0.41 -0.8
3,176,834 + DvMF_2519 0.86 -2.8
3,176,867 + DvMF_2519 0.89 -1.9
3,176,944 - -1.8
3,177,000 + -0.6
3,177,143 + flgH DvMF_2520 0.15 -2.1
3,177,336 - flgH DvMF_2520 0.41 -1.9
3,177,405 + flgH DvMF_2520 0.51 -2.4
3,177,748 - -1.8
3,177,921 - -0.1

Or see this region's nucleotide sequence