Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2458

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2457 and DvMF_2458 are separated by 749 nucleotidesDvMF_2458 and DvMF_2459 are separated by 13 nucleotides DvMF_2457: DvMF_2457 - hypothetical protein (RefSeq), at 3,099,968 to 3,100,159 _2457 DvMF_2458: DvMF_2458 - fumarate reductase respiratory complex transmembrane subunit (RefSeq), at 3,100,909 to 3,101,562 _2458 DvMF_2459: DvMF_2459 - fumarate reductase flavoprotein subunit (RefSeq), at 3,101,576 to 3,103,393 _2459 Position (kb) 3100 3101 3102Strain fitness (log2 ratio) -1 0 1 2 3 4at 3100.027 kb on - strand, within DvMF_2457at 3100.027 kb on - strand, within DvMF_2457at 3100.067 kb on + strand, within DvMF_2457at 3100.439 kb on + strandat 3100.512 kb on - strandat 3100.839 kb on - strandat 3101.009 kb on + strand, within DvMF_2458at 3101.258 kb on - strand, within DvMF_2458at 3101.493 kb on - strand, within DvMF_2458at 3102.053 kb on + strand, within DvMF_2459at 3102.061 kb on - strand, within DvMF_2459at 3102.061 kb on - strand, within DvMF_2459at 3102.063 kb on - strand, within DvMF_2459at 3102.073 kb on - strand, within DvMF_2459at 3102.276 kb on + strand, within DvMF_2459at 3102.333 kb on - strand, within DvMF_2459at 3102.500 kb on + strand, within DvMF_2459

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
3,100,027 - DvMF_2457 0.31 -0.2
3,100,027 - DvMF_2457 0.31 -1.2
3,100,067 + DvMF_2457 0.52 -1.4
3,100,439 + -0.5
3,100,512 - -0.8
3,100,839 - +0.3
3,101,009 + DvMF_2458 0.15 -0.5
3,101,258 - DvMF_2458 0.53 +4.3
3,101,493 - DvMF_2458 0.89 -0.8
3,102,053 + DvMF_2459 0.26 -1.1
3,102,061 - DvMF_2459 0.27 -0.7
3,102,061 - DvMF_2459 0.27 +2.3
3,102,063 - DvMF_2459 0.27 +0.1
3,102,073 - DvMF_2459 0.27 -0.0
3,102,276 + DvMF_2459 0.39 -0.4
3,102,333 - DvMF_2459 0.42 -1.7
3,102,500 + DvMF_2459 0.51 +0.0

Or see this region's nucleotide sequence