Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2454 and DvMF_2455 are separated by 149 nucleotides DvMF_2455 and DvMF_2456 are separated by 154 nucleotides DvMF_2456 and DvMF_2457 are separated by 233 nucleotides
DvMF_2454: DvMF_2454 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 3,096,204 to 3,098,195
_2454
DvMF_2455: DvMF_2455 - hemerythrin-like metal-binding protein (RefSeq), at 3,098,345 to 3,098,800
_2455
DvMF_2456: DvMF_2456 - exodeoxyribonuclease III (RefSeq), at 3,098,955 to 3,099,734
_2456
DvMF_2457: DvMF_2457 - hypothetical protein (RefSeq), at 3,099,968 to 3,100,159
_2457
Position (kb)
3098
3099
3100 Strain fitness (log2 ratio)
-1
0
1 at 3098.000 kb on + strand at 3098.046 kb on - strand at 3098.433 kb on - strand, within DvMF_2455 at 3098.613 kb on + strand, within DvMF_2455 at 3098.676 kb on - strand, within DvMF_2455 at 3098.788 kb on + strand at 3098.808 kb on + strand at 3099.121 kb on - strand, within DvMF_2456 at 3099.219 kb on - strand, within DvMF_2456 at 3099.404 kb on + strand, within DvMF_2456 at 3099.412 kb on - strand, within DvMF_2456 at 3099.493 kb on - strand, within DvMF_2456 at 3099.530 kb on - strand, within DvMF_2456 at 3099.537 kb on + strand, within DvMF_2456 at 3099.545 kb on - strand, within DvMF_2456 at 3099.560 kb on - strand, within DvMF_2456 at 3100.027 kb on - strand, within DvMF_2457 at 3100.027 kb on - strand, within DvMF_2457 at 3100.067 kb on + strand, within DvMF_2457 at 3100.439 kb on + strand at 3100.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 3,098,000 + +0.1 3,098,046 - -0.8 3,098,433 - DvMF_2455 0.19 +0.2 3,098,613 + DvMF_2455 0.59 -0.1 3,098,676 - DvMF_2455 0.73 +0.1 3,098,788 + +0.5 3,098,808 + +0.1 3,099,121 - DvMF_2456 0.21 +0.1 3,099,219 - DvMF_2456 0.34 -0.4 3,099,404 + DvMF_2456 0.58 -1.2 3,099,412 - DvMF_2456 0.59 -1.2 3,099,493 - DvMF_2456 0.69 -0.0 3,099,530 - DvMF_2456 0.74 -0.5 3,099,537 + DvMF_2456 0.75 +0.4 3,099,545 - DvMF_2456 0.76 +0.4 3,099,560 - DvMF_2456 0.78 +0.6 3,100,027 - DvMF_2457 0.31 -0.2 3,100,027 - DvMF_2457 0.31 -1.2 3,100,067 + DvMF_2457 0.52 -1.4 3,100,439 + -0.5 3,100,512 - -0.8
Or see this region's nucleotide sequence