Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2421

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2420 and DvMF_2421 are separated by 182 nucleotidesDvMF_2421 and DvMF_2422 are separated by 97 nucleotidesDvMF_2422 and DvMF_2423 overlap by 4 nucleotides DvMF_2420: DvMF_2420 - hypothetical protein (RefSeq), at 3,058,325 to 3,058,621 _2420 DvMF_2421: DvMF_2421 - hypothetical protein (RefSeq), at 3,058,804 to 3,059,316 _2421 DvMF_2422: DvMF_2422 - type III secretion low calcium response chaperone LcrH/SycD (RefSeq), at 3,059,414 to 3,059,917 _2422 DvMF_2423: DvMF_2423 - hypothetical protein (RefSeq), at 3,059,914 to 3,060,930 _2423 Position (kb) 3058 3059 3060Strain fitness (log2 ratio) -3 -2 -1 0 1at 3057.997 kb on + strandat 3058.508 kb on + strand, within DvMF_2420at 3058.795 kb on - strandat 3059.228 kb on - strand, within DvMF_2421at 3059.228 kb on - strand, within DvMF_2421at 3059.228 kb on - strand, within DvMF_2421at 3059.238 kb on - strand, within DvMF_2421at 3059.480 kb on - strand, within DvMF_2422at 3059.515 kb on + strand, within DvMF_2422at 3059.875 kb on + strandat 3059.877 kb on - strandat 3059.964 kb on - strandat 3060.044 kb on - strand, within DvMF_2423at 3060.171 kb on + strand, within DvMF_2423at 3060.195 kb on + strand, within DvMF_2423at 3060.260 kb on - strand, within DvMF_2423

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,057,997 + -0.6
3,058,508 + DvMF_2420 0.62 -0.8
3,058,795 - -0.4
3,059,228 - DvMF_2421 0.83 -0.3
3,059,228 - DvMF_2421 0.83 -0.3
3,059,228 - DvMF_2421 0.83 +1.1
3,059,238 - DvMF_2421 0.85 -0.7
3,059,480 - DvMF_2422 0.13 -0.4
3,059,515 + DvMF_2422 0.20 -0.0
3,059,875 + -0.3
3,059,877 - -0.5
3,059,964 - -2.9
3,060,044 - DvMF_2423 0.13 -0.8
3,060,171 + DvMF_2423 0.25 -0.6
3,060,195 + DvMF_2423 0.28 -1.0
3,060,260 - DvMF_2423 0.34 -0.8

Or see this region's nucleotide sequence