Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2420 and DvMF_2421 are separated by 182 nucleotides DvMF_2421 and DvMF_2422 are separated by 97 nucleotides DvMF_2422 and DvMF_2423 overlap by 4 nucleotides
DvMF_2420: DvMF_2420 - hypothetical protein (RefSeq), at 3,058,325 to 3,058,621
_2420
DvMF_2421: DvMF_2421 - hypothetical protein (RefSeq), at 3,058,804 to 3,059,316
_2421
DvMF_2422: DvMF_2422 - type III secretion low calcium response chaperone LcrH/SycD (RefSeq), at 3,059,414 to 3,059,917
_2422
DvMF_2423: DvMF_2423 - hypothetical protein (RefSeq), at 3,059,914 to 3,060,930
_2423
Position (kb)
3058
3059
3060 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3057.997 kb on + strand at 3058.508 kb on + strand, within DvMF_2420 at 3058.795 kb on - strand at 3059.228 kb on - strand, within DvMF_2421 at 3059.228 kb on - strand, within DvMF_2421 at 3059.228 kb on - strand, within DvMF_2421 at 3059.238 kb on - strand, within DvMF_2421 at 3059.480 kb on - strand, within DvMF_2422 at 3059.515 kb on + strand, within DvMF_2422 at 3059.875 kb on + strand at 3059.877 kb on - strand at 3059.964 kb on - strand at 3060.044 kb on - strand, within DvMF_2423 at 3060.171 kb on + strand, within DvMF_2423 at 3060.195 kb on + strand, within DvMF_2423 at 3060.260 kb on - strand, within DvMF_2423
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 3,057,997 + -0.6 3,058,508 + DvMF_2420 0.62 -0.8 3,058,795 - -0.4 3,059,228 - DvMF_2421 0.83 -0.3 3,059,228 - DvMF_2421 0.83 -0.3 3,059,228 - DvMF_2421 0.83 +1.1 3,059,238 - DvMF_2421 0.85 -0.7 3,059,480 - DvMF_2422 0.13 -0.4 3,059,515 + DvMF_2422 0.20 -0.0 3,059,875 + -0.3 3,059,877 - -0.5 3,059,964 - -2.9 3,060,044 - DvMF_2423 0.13 -0.8 3,060,171 + DvMF_2423 0.25 -0.6 3,060,195 + DvMF_2423 0.28 -1.0 3,060,260 - DvMF_2423 0.34 -0.8
Or see this region's nucleotide sequence