Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2376

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2374 and DvMF_2375 are separated by 199 nucleotidesDvMF_2375 and DvMF_2376 are separated by 4 nucleotidesDvMF_2376 and DvMF_2377 are separated by 380 nucleotides DvMF_2374: DvMF_2374 - oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 2,998,829 to 3,000,175 _2374 DvMF_2375: DvMF_2375 - protein of unknown function DUF208 (RefSeq), at 3,000,375 to 3,001,025 _2375 DvMF_2376: DvMF_2376 - ribonuclease, Rne/Rng family (RefSeq), at 3,001,030 to 3,002,505 _2376 DvMF_2377: DvMF_2377 - Radical SAM domain protein (RefSeq), at 3,002,886 to 3,003,983 _2377 Position (kb) 3001 3002 3003Strain fitness (log2 ratio) -2 -1 0 1at 3000.689 kb on + strand, within DvMF_2375at 3000.702 kb on - strand, within DvMF_2375at 3000.872 kb on + strand, within DvMF_2375at 3000.913 kb on + strand, within DvMF_2375at 3003.005 kb on + strand, within DvMF_2377at 3003.189 kb on + strand, within DvMF_2377at 3003.275 kb on - strand, within DvMF_2377at 3003.287 kb on + strand, within DvMF_2377

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,000,689 + DvMF_2375 0.48 +0.1
3,000,702 - DvMF_2375 0.50 +0.0
3,000,872 + DvMF_2375 0.76 -0.8
3,000,913 + DvMF_2375 0.83 +0.2
3,003,005 + DvMF_2377 0.11 -2.3
3,003,189 + DvMF_2377 0.28 -2.5
3,003,275 - DvMF_2377 0.35 -1.1
3,003,287 + DvMF_2377 0.37 -2.0

Or see this region's nucleotide sequence