Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2367 and DvMF_2368 are separated by 102 nucleotides DvMF_2368 and DvMF_2369 are separated by 142 nucleotides DvMF_2369 and DvMF_2370 are separated by 116 nucleotides
DvMF_2367: DvMF_2367 - Rubrerythrin (RefSeq), at 2,988,087 to 2,988,662
_2367
DvMF_2368: DvMF_2368 - Rubredoxin-type Fe(Cys)4 protein (RefSeq), at 2,988,765 to 2,988,992
_2368
DvMF_2369: DvMF_2369 - TPR repeat-containing protein (RefSeq), at 2,989,135 to 2,989,950
_2369
DvMF_2370: DvMF_2370 - carbamoyl phosphate synthase small subunit (RefSeq), at 2,990,067 to 2,991,197
_2370
Position (kb)
2989
2990 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2988.360 kb on - strand, within DvMF_2367 at 2988.424 kb on + strand, within DvMF_2367 at 2988.666 kb on + strand at 2988.782 kb on + strand at 2988.898 kb on + strand, within DvMF_2368 at 2989.265 kb on + strand, within DvMF_2369 at 2989.379 kb on - strand, within DvMF_2369 at 2989.446 kb on - strand, within DvMF_2369 at 2989.627 kb on - strand, within DvMF_2369 at 2989.672 kb on - strand, within DvMF_2369 at 2989.672 kb on - strand, within DvMF_2369 at 2989.695 kb on - strand, within DvMF_2369 at 2989.695 kb on - strand, within DvMF_2369 at 2989.700 kb on - strand, within DvMF_2369 at 2989.739 kb on + strand, within DvMF_2369 at 2989.749 kb on + strand, within DvMF_2369 at 2989.862 kb on + strand, within DvMF_2369 at 2989.869 kb on - strand at 2990.095 kb on + strand at 2990.103 kb on - strand at 2990.149 kb on + strand at 2990.250 kb on + strand, within DvMF_2370 at 2990.250 kb on + strand, within DvMF_2370 at 2990.250 kb on + strand, within DvMF_2370 at 2990.590 kb on - strand, within DvMF_2370 at 2990.870 kb on + strand, within DvMF_2370
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,988,360 - DvMF_2367 0.47 -0.5 2,988,424 + DvMF_2367 0.59 -0.2 2,988,666 + -0.3 2,988,782 + -0.5 2,988,898 + DvMF_2368 0.58 -0.5 2,989,265 + DvMF_2369 0.16 -1.9 2,989,379 - DvMF_2369 0.30 -1.6 2,989,446 - DvMF_2369 0.38 -0.8 2,989,627 - DvMF_2369 0.60 +0.0 2,989,672 - DvMF_2369 0.66 -2.2 2,989,672 - DvMF_2369 0.66 -0.7 2,989,695 - DvMF_2369 0.69 -3.4 2,989,695 - DvMF_2369 0.69 -1.8 2,989,700 - DvMF_2369 0.69 -1.8 2,989,739 + DvMF_2369 0.74 -2.5 2,989,749 + DvMF_2369 0.75 -3.1 2,989,862 + DvMF_2369 0.89 -1.5 2,989,869 - -1.7 2,990,095 + -4.9 2,990,103 - -3.4 2,990,149 + -1.5 2,990,250 + DvMF_2370 0.16 -3.0 2,990,250 + DvMF_2370 0.16 -0.8 2,990,250 + DvMF_2370 0.16 -1.9 2,990,590 - DvMF_2370 0.46 -3.4 2,990,870 + DvMF_2370 0.71 -1.6
Or see this region's nucleotide sequence