Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2358

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2357 and DvMF_2358 are separated by 274 nucleotidesDvMF_2358 and DvMF_2359 are separated by 394 nucleotides DvMF_2357: DvMF_2357 - AMP-binding domain protein (RefSeq), at 2,976,231 to 2,977,883 _2357 DvMF_2358: DvMF_2358 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein (RefSeq), at 2,978,158 to 2,979,636 _2358 DvMF_2359: DvMF_2359 - peptidoglycan-associated lipoprotein (RefSeq), at 2,980,031 to 2,980,543 _2359 Position (kb) 2978 2979 2980Strain fitness (log2 ratio) -1 0 1at 2977.308 kb on - strand, within DvMF_2357at 2977.337 kb on + strand, within DvMF_2357at 2977.418 kb on + strand, within DvMF_2357at 2977.766 kb on - strandat 2978.134 kb on + strandat 2978.556 kb on - strand, within DvMF_2358at 2978.583 kb on - strand, within DvMF_2358at 2978.757 kb on - strand, within DvMF_2358at 2978.791 kb on + strand, within DvMF_2358at 2978.791 kb on + strand, within DvMF_2358at 2978.879 kb on - strand, within DvMF_2358at 2978.981 kb on + strand, within DvMF_2358at 2979.339 kb on + strand, within DvMF_2358at 2979.610 kb on + strandat 2979.693 kb on + strandat 2979.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,977,308 - DvMF_2357 0.65 -1.1
2,977,337 + DvMF_2357 0.67 -1.1
2,977,418 + DvMF_2357 0.72 -1.0
2,977,766 - -0.9
2,978,134 + -0.9
2,978,556 - DvMF_2358 0.27 -0.1
2,978,583 - DvMF_2358 0.29 -0.4
2,978,757 - DvMF_2358 0.41 +0.4
2,978,791 + DvMF_2358 0.43 -0.4
2,978,791 + DvMF_2358 0.43 +0.2
2,978,879 - DvMF_2358 0.49 -0.5
2,978,981 + DvMF_2358 0.56 -0.4
2,979,339 + DvMF_2358 0.80 -0.8
2,979,610 + +0.2
2,979,693 + -0.6
2,979,886 - -0.7

Or see this region's nucleotide sequence