Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2313

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2312 and DvMF_2313 are separated by 366 nucleotidesDvMF_2313 and DvMF_2314 are separated by 50 nucleotidesDvMF_2314 and DvMF_2315 overlap by 4 nucleotides DvMF_2312: DvMF_2312 - metallophosphoesterase (RefSeq), at 2,909,594 to 2,911,135 _2312 DvMF_2313: DvMF_2313 - DNA-directed DNA polymerase (RefSeq), at 2,911,502 to 2,912,947 _2313 DvMF_2314: DvMF_2314 - aminotransferase class IV (RefSeq), at 2,912,998 to 2,913,771 _2314 DvMF_2315: DvMF_2315 - Chorismate binding-like protein (RefSeq), at 2,913,768 to 2,915,411 _2315 Position (kb) 2911 2912 2913Strain fitness (log2 ratio) -2 -1 0 1 2at 2910.508 kb on - strand, within DvMF_2312at 2910.575 kb on + strand, within DvMF_2312at 2910.630 kb on + strand, within DvMF_2312at 2910.638 kb on - strand, within DvMF_2312at 2910.910 kb on + strand, within DvMF_2312at 2910.924 kb on - strand, within DvMF_2312at 2910.945 kb on - strand, within DvMF_2312at 2911.344 kb on + strandat 2911.523 kb on - strandat 2911.680 kb on + strand, within DvMF_2313at 2911.859 kb on - strand, within DvMF_2313at 2911.869 kb on - strand, within DvMF_2313at 2911.996 kb on + strand, within DvMF_2313at 2912.046 kb on + strand, within DvMF_2313at 2912.111 kb on + strand, within DvMF_2313at 2912.179 kb on + strand, within DvMF_2313at 2912.240 kb on + strand, within DvMF_2313at 2912.394 kb on + strand, within DvMF_2313at 2912.400 kb on + strand, within DvMF_2313at 2912.510 kb on - strand, within DvMF_2313at 2912.980 kb on + strandat 2913.192 kb on - strand, within DvMF_2314at 2913.194 kb on + strand, within DvMF_2314at 2913.796 kb on + strandat 2913.796 kb on + strandat 2913.845 kb on - strandat 2913.899 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,910,508 - DvMF_2312 0.59 -0.5
2,910,575 + DvMF_2312 0.64 -0.6
2,910,630 + DvMF_2312 0.67 -1.3
2,910,638 - DvMF_2312 0.68 -0.7
2,910,910 + DvMF_2312 0.85 -0.7
2,910,924 - DvMF_2312 0.86 -0.4
2,910,945 - DvMF_2312 0.88 -0.4
2,911,344 + -2.3
2,911,523 - -0.7
2,911,680 + DvMF_2313 0.12 -0.5
2,911,859 - DvMF_2313 0.25 -0.5
2,911,869 - DvMF_2313 0.25 -0.4
2,911,996 + DvMF_2313 0.34 -0.2
2,912,046 + DvMF_2313 0.38 -1.3
2,912,111 + DvMF_2313 0.42 -0.8
2,912,179 + DvMF_2313 0.47 +0.8
2,912,240 + DvMF_2313 0.51 -0.7
2,912,394 + DvMF_2313 0.62 -0.1
2,912,400 + DvMF_2313 0.62 -0.7
2,912,510 - DvMF_2313 0.70 +1.1
2,912,980 + -0.1
2,913,192 - DvMF_2314 0.25 +2.1
2,913,194 + DvMF_2314 0.25 -0.3
2,913,796 + -0.0
2,913,796 + -1.2
2,913,845 - -0.5
2,913,899 - -1.0

Or see this region's nucleotide sequence