Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2251

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2250 and DvMF_2251 are separated by 314 nucleotidesDvMF_2251 and DvMF_2252 overlap by 4 nucleotides DvMF_2250: DvMF_2250 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 2,826,744 to 2,827,967 _2250 DvMF_2251: DvMF_2251 - hypothetical protein (RefSeq), at 2,828,282 to 2,828,776 _2251 DvMF_2252: DvMF_2252 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,828,773 to 2,831,745 _2252 Position (kb) 2828 2829Strain fitness (log2 ratio) -1 0 1at 2827.445 kb on - strand, within DvMF_2250at 2827.554 kb on + strand, within DvMF_2250at 2827.688 kb on - strand, within DvMF_2250at 2827.745 kb on - strand, within DvMF_2250at 2827.785 kb on + strand, within DvMF_2250at 2827.801 kb on + strand, within DvMF_2250at 2827.809 kb on - strand, within DvMF_2250at 2828.090 kb on - strandat 2828.415 kb on + strand, within DvMF_2251at 2828.575 kb on - strand, within DvMF_2251at 2828.597 kb on - strand, within DvMF_2251at 2828.764 kb on + strandat 2829.038 kb on - strandat 2829.103 kb on - strand, within DvMF_2252at 2829.220 kb on + strand, within DvMF_2252at 2829.313 kb on - strand, within DvMF_2252at 2829.430 kb on + strand, within DvMF_2252at 2829.491 kb on + strand, within DvMF_2252at 2829.536 kb on + strand, within DvMF_2252at 2829.585 kb on + strand, within DvMF_2252at 2829.754 kb on - strand, within DvMF_2252

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,827,445 - DvMF_2250 0.57 -1.7
2,827,554 + DvMF_2250 0.66 -0.5
2,827,688 - DvMF_2250 0.77 -0.6
2,827,745 - DvMF_2250 0.82 -0.5
2,827,785 + DvMF_2250 0.85 -0.3
2,827,801 + DvMF_2250 0.86 -0.3
2,827,809 - DvMF_2250 0.87 -0.2
2,828,090 - -0.6
2,828,415 + DvMF_2251 0.27 -0.3
2,828,575 - DvMF_2251 0.59 -0.5
2,828,597 - DvMF_2251 0.64 +0.2
2,828,764 + -1.4
2,829,038 - -0.5
2,829,103 - DvMF_2252 0.11 -1.3
2,829,220 + DvMF_2252 0.15 -0.9
2,829,313 - DvMF_2252 0.18 -0.9
2,829,430 + DvMF_2252 0.22 -0.5
2,829,491 + DvMF_2252 0.24 -1.2
2,829,536 + DvMF_2252 0.26 -1.1
2,829,585 + DvMF_2252 0.27 -0.3
2,829,754 - DvMF_2252 0.33 -0.6

Or see this region's nucleotide sequence