Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2184

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2183 and DvMF_2184 are separated by 228 nucleotidesDvMF_2184 and DvMF_2185 are separated by 296 nucleotides DvMF_2183: DvMF_2183 - malate synthase G (RefSeq), at 2,723,923 to 2,726,118 _2183 DvMF_2184: DvMF_2184 - hypothetical protein (RefSeq), at 2,726,347 to 2,727,660 _2184 DvMF_2185: DvMF_2185 - ThiJ/PfpI domain protein (RefSeq), at 2,727,957 to 2,728,697 _2185 Position (kb) 2726 2727 2728Strain fitness (log2 ratio) -2 -1 0 1 2at 2725.598 kb on - strand, within DvMF_2183at 2725.615 kb on + strand, within DvMF_2183at 2725.648 kb on + strand, within DvMF_2183at 2725.756 kb on + strand, within DvMF_2183at 2725.757 kb on - strand, within DvMF_2183at 2725.766 kb on + strand, within DvMF_2183at 2725.774 kb on - strand, within DvMF_2183at 2725.795 kb on - strand, within DvMF_2183at 2725.803 kb on - strand, within DvMF_2183at 2725.811 kb on + strand, within DvMF_2183at 2726.004 kb on + strandat 2726.057 kb on + strandat 2726.078 kb on + strandat 2726.084 kb on + strandat 2726.112 kb on + strandat 2726.263 kb on + strandat 2726.289 kb on + strandat 2726.408 kb on + strandat 2726.410 kb on - strandat 2726.450 kb on - strandat 2726.519 kb on + strand, within DvMF_2184at 2726.539 kb on - strand, within DvMF_2184at 2726.573 kb on - strand, within DvMF_2184at 2726.846 kb on - strand, within DvMF_2184at 2727.031 kb on - strand, within DvMF_2184at 2727.120 kb on - strand, within DvMF_2184at 2727.235 kb on + strand, within DvMF_2184at 2727.243 kb on - strand, within DvMF_2184at 2727.287 kb on + strand, within DvMF_2184at 2727.351 kb on + strand, within DvMF_2184at 2727.351 kb on + strand, within DvMF_2184at 2727.655 kb on + strandat 2727.679 kb on + strandat 2727.737 kb on - strandat 2728.013 kb on - strandat 2728.118 kb on + strand, within DvMF_2185at 2728.148 kb on - strand, within DvMF_2185at 2728.153 kb on - strand, within DvMF_2185

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,725,598 - DvMF_2183 0.76 -1.2
2,725,615 + DvMF_2183 0.77 -1.0
2,725,648 + DvMF_2183 0.79 -0.7
2,725,756 + DvMF_2183 0.83 -0.4
2,725,757 - DvMF_2183 0.84 -2.0
2,725,766 + DvMF_2183 0.84 +0.2
2,725,774 - DvMF_2183 0.84 -0.1
2,725,795 - DvMF_2183 0.85 -0.6
2,725,803 - DvMF_2183 0.86 -0.2
2,725,811 + DvMF_2183 0.86 -0.7
2,726,004 + -0.1
2,726,057 + -0.2
2,726,078 + -0.2
2,726,084 + -0.4
2,726,112 + -1.1
2,726,263 + -0.5
2,726,289 + -0.0
2,726,408 + -0.4
2,726,410 - -0.2
2,726,450 - -2.5
2,726,519 + DvMF_2184 0.13 -0.1
2,726,539 - DvMF_2184 0.15 -0.6
2,726,573 - DvMF_2184 0.17 -0.8
2,726,846 - DvMF_2184 0.38 -0.8
2,727,031 - DvMF_2184 0.52 +0.8
2,727,120 - DvMF_2184 0.59 -0.7
2,727,235 + DvMF_2184 0.68 -1.0
2,727,243 - DvMF_2184 0.68 -1.4
2,727,287 + DvMF_2184 0.72 -0.6
2,727,351 + DvMF_2184 0.76 -0.8
2,727,351 + DvMF_2184 0.76 -0.7
2,727,655 + +2.2
2,727,679 + -1.4
2,727,737 - -0.0
2,728,013 - -0.3
2,728,118 + DvMF_2185 0.22 +1.1
2,728,148 - DvMF_2185 0.26 +0.8
2,728,153 - DvMF_2185 0.26 -0.6

Or see this region's nucleotide sequence