Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2181

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2180 and DvMF_2181 are separated by 568 nucleotidesDvMF_2181 and DvMF_2182 are separated by 340 nucleotides DvMF_2180: DvMF_2180 - metallo-beta-lactamase/flavodoxin domain-containing protein (RefSeq), at 2,718,931 to 2,720,124 _2180 DvMF_2181: DvMF_2181 - heat shock protein Hsp20 (RefSeq), at 2,720,693 to 2,721,304 _2181 DvMF_2182: DvMF_2182 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,721,645 to 2,723,423 _2182 Position (kb) 2720 2721 2722Strain fitness (log2 ratio) -1 0 1at 2720.084 kb on - strandat 2720.087 kb on + strandat 2720.116 kb on - strandat 2720.213 kb on - strandat 2720.273 kb on + strandat 2720.443 kb on - strandat 2720.883 kb on + strand, within DvMF_2181at 2721.069 kb on - strand, within DvMF_2181at 2721.138 kb on - strand, within DvMF_2181at 2721.172 kb on - strand, within DvMF_2181at 2721.373 kb on - strandat 2721.456 kb on + strandat 2721.530 kb on + strandat 2721.600 kb on - strandat 2721.620 kb on + strandat 2721.650 kb on - strandat 2721.731 kb on + strandat 2722.275 kb on + strand, within DvMF_2182at 2722.282 kb on + strand, within DvMF_2182

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,720,084 - +0.9
2,720,087 + -0.7
2,720,116 - -0.1
2,720,213 - -0.7
2,720,273 + -0.6
2,720,443 - +0.1
2,720,883 + DvMF_2181 0.31 +0.1
2,721,069 - DvMF_2181 0.61 +0.2
2,721,138 - DvMF_2181 0.73 -0.6
2,721,172 - DvMF_2181 0.78 -0.3
2,721,373 - -0.8
2,721,456 + -0.9
2,721,530 + -0.7
2,721,600 - -0.8
2,721,620 + -0.6
2,721,650 - -0.9
2,721,731 + +0.2
2,722,275 + DvMF_2182 0.35 -0.6
2,722,282 + DvMF_2182 0.36 -0.9

Or see this region's nucleotide sequence