Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2165 and DvMF_2166 are separated by 309 nucleotides DvMF_2166 and DvMF_2167 are separated by 121 nucleotides DvMF_2167 and DvMF_2168 are separated by 204 nucleotides
DvMF_2165: DvMF_2165 - transcriptional regulator, TetR family (RefSeq), at 2,701,562 to 2,702,353
_2165
DvMF_2166: DvMF_2166 - protein of unknown function DUF169 (RefSeq), at 2,702,663 to 2,703,508
_2166
DvMF_2167: DvMF_2167 - transcriptional regulator, MarR family (RefSeq), at 2,703,630 to 2,704,115
_2167
DvMF_2168: DvMF_2168 - transcriptional regulator, TraR/DksA family (RefSeq), at 2,704,320 to 2,704,748
_2168
Position (kb)
2702
2703
2704 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2701.954 kb on + strand, within DvMF_2165 at 2701.981 kb on + strand, within DvMF_2165 at 2702.257 kb on - strand, within DvMF_2165 at 2702.259 kb on + strand, within DvMF_2165 at 2702.277 kb on + strand at 2702.577 kb on - strand at 2702.752 kb on + strand, within DvMF_2166 at 2702.880 kb on + strand, within DvMF_2166 at 2702.897 kb on + strand, within DvMF_2166 at 2703.207 kb on + strand, within DvMF_2166 at 2703.429 kb on + strand at 2703.431 kb on + strand at 2703.746 kb on + strand, within DvMF_2167 at 2703.870 kb on - strand, within DvMF_2167 at 2703.917 kb on + strand, within DvMF_2167 at 2704.013 kb on - strand, within DvMF_2167 at 2704.177 kb on - strand at 2704.191 kb on + strand at 2704.356 kb on - strand at 2704.400 kb on + strand, within DvMF_2168 at 2704.428 kb on + strand, within DvMF_2168 at 2704.433 kb on + strand, within DvMF_2168 at 2704.433 kb on + strand, within DvMF_2168
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,701,954 + DvMF_2165 0.49 -1.1 2,701,981 + DvMF_2165 0.53 -2.2 2,702,257 - DvMF_2165 0.88 -0.5 2,702,259 + DvMF_2165 0.88 -0.7 2,702,277 + -1.4 2,702,577 - -0.6 2,702,752 + DvMF_2166 0.11 -1.7 2,702,880 + DvMF_2166 0.26 -0.9 2,702,897 + DvMF_2166 0.28 -0.3 2,703,207 + DvMF_2166 0.64 -1.1 2,703,429 + -0.3 2,703,431 + -0.3 2,703,746 + DvMF_2167 0.24 +0.4 2,703,870 - DvMF_2167 0.49 -0.3 2,703,917 + DvMF_2167 0.59 +0.5 2,704,013 - DvMF_2167 0.79 -0.3 2,704,177 - -0.6 2,704,191 + -0.9 2,704,356 - -0.3 2,704,400 + DvMF_2168 0.19 -0.3 2,704,428 + DvMF_2168 0.25 -0.1 2,704,433 + DvMF_2168 0.26 -2.8 2,704,433 + DvMF_2168 0.26 +0.2
Or see this region's nucleotide sequence