Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2139

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2138 and DvMF_2139 are separated by 190 nucleotidesDvMF_2139 and DvMF_2140 are separated by 303 nucleotidesDvMF_2140 and DvMF_2141 are separated by 78 nucleotides DvMF_2138: DvMF_2138 - transcriptional regulator, LysR family (RefSeq), at 2,662,566 to 2,663,579 _2138 DvMF_2139: DvMF_2139 - hypothetical protein (RefSeq), at 2,663,770 to 2,663,901 _2139 DvMF_2140: DvMF_2140 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 2,664,205 to 2,664,789 _2140 DvMF_2141: DvMF_2141 - peptidase U32 (RefSeq), at 2,664,868 to 2,666,997 _2141 Position (kb) 2663 2664Strain fitness (log2 ratio) -2 -1 0 1at 2663.388 kb on - strand, within DvMF_2138at 2663.409 kb on + strand, within DvMF_2138at 2663.417 kb on - strand, within DvMF_2138at 2663.714 kb on + strandat 2663.731 kb on - strandat 2663.828 kb on + strand, within DvMF_2139at 2663.877 kb on - strand, within DvMF_2139at 2663.900 kb on - strandat 2664.228 kb on + strandat 2664.300 kb on - strand, within DvMF_2140at 2664.347 kb on - strand, within DvMF_2140at 2664.386 kb on + strand, within DvMF_2140at 2664.491 kb on - strand, within DvMF_2140at 2664.610 kb on + strand, within DvMF_2140at 2664.764 kb on - strandat 2664.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,663,388 - DvMF_2138 0.81 -0.6
2,663,409 + DvMF_2138 0.83 -0.7
2,663,417 - DvMF_2138 0.84 -2.2
2,663,714 + -0.8
2,663,731 - -0.7
2,663,828 + DvMF_2139 0.44 -1.1
2,663,877 - DvMF_2139 0.81 -1.9
2,663,900 - -0.2
2,664,228 + +0.1
2,664,300 - DvMF_2140 0.16 -0.6
2,664,347 - DvMF_2140 0.24 -0.9
2,664,386 + DvMF_2140 0.31 -0.7
2,664,491 - DvMF_2140 0.49 -0.8
2,664,610 + DvMF_2140 0.69 -0.6
2,664,764 - -0.6
2,664,790 + -0.3

Or see this region's nucleotide sequence