Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1953

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1952 and DvMF_1953 are separated by 78 nucleotidesDvMF_1953 and DvMF_1954 are separated by 95 nucleotidesDvMF_1954 and DvMF_1955 are separated by 18 nucleotidesDvMF_1955 and DvMF_1956 are separated by 78 nucleotides DvMF_1952: DvMF_1952 - glycosyl transferase family 2 (RefSeq), at 2,412,960 to 2,414,591 _1952 DvMF_1953: DvMF_1953 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,414,670 to 2,415,680 _1953 DvMF_1954: DvMF_1954 - hypothetical protein (RefSeq), at 2,415,776 to 2,416,114 _1954 DvMF_1955: DvMF_1955 - thiamineS protein (RefSeq), at 2,416,133 to 2,416,360 _1955 DvMF_1956: DvMF_1956 - Aldehyde ferredoxin oxidoreductase (RefSeq), at 2,416,439 to 2,418,166 _1956 Position (kb) 2414 2415 2416Strain fitness (log2 ratio) -2 -1 0 1at 2414.187 kb on + strand, within DvMF_1952at 2414.333 kb on + strand, within DvMF_1952at 2414.553 kb on - strandat 2414.787 kb on - strand, within DvMF_1953at 2414.790 kb on + strand, within DvMF_1953at 2414.904 kb on + strand, within DvMF_1953at 2415.043 kb on + strand, within DvMF_1953at 2415.329 kb on - strand, within DvMF_1953at 2415.508 kb on - strand, within DvMF_1953at 2415.784 kb on + strandat 2416.123 kb on - strandat 2416.129 kb on + strandat 2416.157 kb on - strand, within DvMF_1955at 2416.199 kb on + strand, within DvMF_1955at 2416.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,414,187 + DvMF_1952 0.75 -0.4
2,414,333 + DvMF_1952 0.84 -1.2
2,414,553 - -1.0
2,414,787 - DvMF_1953 0.12 -1.2
2,414,790 + DvMF_1953 0.12 -0.9
2,414,904 + DvMF_1953 0.23 -2.3
2,415,043 + DvMF_1953 0.37 -0.7
2,415,329 - DvMF_1953 0.65 -0.8
2,415,508 - DvMF_1953 0.83 -0.8
2,415,784 + -1.6
2,416,123 - +0.3
2,416,129 + -0.9
2,416,157 - DvMF_1955 0.11 -2.1
2,416,199 + DvMF_1955 0.29 -0.2
2,416,496 - -0.5

Or see this region's nucleotide sequence