Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1949

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1948 and DvMF_1949 are separated by 280 nucleotidesDvMF_1949 and DvMF_1950 are separated by 333 nucleotides DvMF_1948: DvMF_1948 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 2,407,936 to 2,409,648 _1948 DvMF_1949: DvMF_1949 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,409,929 to 2,410,828 _1949 DvMF_1950: DvMF_1950 - transcriptional regulator, AraC family (RefSeq), at 2,411,162 to 2,412,178 _1950 Position (kb) 2409 2410 2411Strain fitness (log2 ratio) -1 0 1 2at 2409.887 kb on + strandat 2410.025 kb on - strand, within DvMF_1949at 2410.043 kb on - strand, within DvMF_1949at 2410.503 kb on + strand, within DvMF_1949at 2410.659 kb on - strand, within DvMF_1949at 2410.779 kb on + strandat 2410.916 kb on + strandat 2411.149 kb on - strandat 2411.363 kb on + strand, within DvMF_1950at 2411.371 kb on - strand, within DvMF_1950at 2411.371 kb on - strand, within DvMF_1950at 2411.477 kb on + strand, within DvMF_1950at 2411.530 kb on - strand, within DvMF_1950

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,409,887 + -0.1
2,410,025 - DvMF_1949 0.11 -0.4
2,410,043 - DvMF_1949 0.13 -0.3
2,410,503 + DvMF_1949 0.64 -0.7
2,410,659 - DvMF_1949 0.81 -1.7
2,410,779 + -0.4
2,410,916 + -0.0
2,411,149 - +2.2
2,411,363 + DvMF_1950 0.20 +0.3
2,411,371 - DvMF_1950 0.21 -1.0
2,411,371 - DvMF_1950 0.21 -1.0
2,411,477 + DvMF_1950 0.31 -0.1
2,411,530 - DvMF_1950 0.36 -0.5

Or see this region's nucleotide sequence