Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1918 and DvMF_1919 are separated by 139 nucleotides DvMF_1919 and DvMF_1920 are separated by 12 nucleotides DvMF_1920 and DvMF_1921 are separated by 211 nucleotides
DvMF_1918: DvMF_1918 - extracellular solute-binding protein family 3 (RefSeq), at 2,364,579 to 2,365,325
_1918
DvMF_1919: DvMF_1919 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 2,365,465 to 2,366,136
_1919
DvMF_1920: DvMF_1920 - ABC transporter related (RefSeq), at 2,366,149 to 2,366,898
_1920
DvMF_1921: DvMF_1921 - A/G-specific adenine glycosylase (RefSeq), at 2,367,110 to 2,368,414
_1921
Position (kb)
2365
2366
2367 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2364.854 kb on + strand, within DvMF_1918 at 2365.019 kb on + strand, within DvMF_1918 at 2365.333 kb on - strand at 2365.476 kb on - strand at 2365.596 kb on + strand, within DvMF_1919 at 2365.604 kb on - strand, within DvMF_1919 at 2366.112 kb on + strand at 2366.225 kb on + strand, within DvMF_1920 at 2366.225 kb on + strand, within DvMF_1920 at 2366.233 kb on - strand, within DvMF_1920 at 2366.459 kb on + strand, within DvMF_1920 at 2366.872 kb on + strand at 2366.910 kb on - strand at 2367.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,364,854 + DvMF_1918 0.37 -1.5 2,365,019 + DvMF_1918 0.59 -1.8 2,365,333 - -3.0 2,365,476 - -1.5 2,365,596 + DvMF_1919 0.19 +0.4 2,365,604 - DvMF_1919 0.21 +0.2 2,366,112 + -0.1 2,366,225 + DvMF_1920 0.10 -0.7 2,366,225 + DvMF_1920 0.10 -0.6 2,366,233 - DvMF_1920 0.11 +0.7 2,366,459 + DvMF_1920 0.41 -0.6 2,366,872 + -0.0 2,366,910 - -1.9 2,367,046 - -1.0
Or see this region's nucleotide sequence