Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1917

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1916 and DvMF_1917 are separated by 188 nucleotidesDvMF_1917 and DvMF_1918 are separated by 298 nucleotides DvMF_1916: DvMF_1916 - zinc/iron permease (RefSeq), at 2,361,327 to 2,362,139 _1916 DvMF_1917: DvMF_1917 - heavy metal translocating P-type ATPase (RefSeq), at 2,362,328 to 2,364,280 _1917 DvMF_1918: DvMF_1918 - extracellular solute-binding protein family 3 (RefSeq), at 2,364,579 to 2,365,325 _1918 Position (kb) 2362 2363 2364 2365Strain fitness (log2 ratio) -2 -1 0 1 2at 2361.360 kb on + strandat 2361.428 kb on - strand, within DvMF_1916at 2361.628 kb on + strand, within DvMF_1916at 2361.693 kb on - strand, within DvMF_1916at 2361.844 kb on + strand, within DvMF_1916at 2362.019 kb on - strand, within DvMF_1916at 2362.136 kb on - strandat 2362.399 kb on + strandat 2362.584 kb on + strand, within DvMF_1917at 2363.166 kb on - strand, within DvMF_1917at 2363.523 kb on + strand, within DvMF_1917at 2363.630 kb on + strand, within DvMF_1917at 2363.730 kb on + strand, within DvMF_1917at 2364.291 kb on - strandat 2364.296 kb on - strandat 2364.296 kb on - strandat 2364.366 kb on + strandat 2364.854 kb on + strand, within DvMF_1918at 2365.019 kb on + strand, within DvMF_1918

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,361,360 + -0.5
2,361,428 - DvMF_1916 0.12 -1.8
2,361,628 + DvMF_1916 0.37 -0.7
2,361,693 - DvMF_1916 0.45 -0.8
2,361,844 + DvMF_1916 0.64 +2.2
2,362,019 - DvMF_1916 0.85 -0.8
2,362,136 - +1.4
2,362,399 + -0.5
2,362,584 + DvMF_1917 0.13 -2.2
2,363,166 - DvMF_1917 0.43 -0.4
2,363,523 + DvMF_1917 0.61 -0.5
2,363,630 + DvMF_1917 0.67 -0.3
2,363,730 + DvMF_1917 0.72 -2.6
2,364,291 - -0.1
2,364,296 - -0.3
2,364,296 - -1.2
2,364,366 + -0.5
2,364,854 + DvMF_1918 0.37 -1.5
2,365,019 + DvMF_1918 0.59 -1.8

Or see this region's nucleotide sequence