Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1900 and DvMF_1901 are separated by 10 nucleotides DvMF_1901 and DvMF_1902 are separated by 129 nucleotides DvMF_1902 and DvMF_1903 are separated by 144 nucleotides
DvMF_1900: DvMF_1900 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,339,805 to 2,340,575
_1900
DvMF_1901: DvMF_1901 - transferase hexapeptide repeat containing protein (RefSeq), at 2,340,586 to 2,341,224
_1901
DvMF_1902: DvMF_1902 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 2,341,354 to 2,342,259
_1902
DvMF_1903: DvMF_1903 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,342,404 to 2,343,045
_1903
Position (kb)
2341
2342
2343 Strain fitness (log2 ratio)
-2
-1
0
1 at 2340.774 kb on - strand, within DvMF_1901 at 2340.912 kb on - strand, within DvMF_1901 at 2341.176 kb on + strand at 2341.238 kb on - strand at 2341.568 kb on - strand, within DvMF_1902 at 2341.661 kb on + strand, within DvMF_1902 at 2341.756 kb on - strand, within DvMF_1902 at 2342.002 kb on - strand, within DvMF_1902 at 2342.002 kb on - strand, within DvMF_1902 at 2342.598 kb on - strand, within DvMF_1903 at 2342.845 kb on - strand, within DvMF_1903 at 2343.032 kb on - strand at 2343.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,340,774 - DvMF_1901 0.29 -1.8 2,340,912 - DvMF_1901 0.51 -1.3 2,341,176 + -2.0 2,341,238 - -0.8 2,341,568 - DvMF_1902 0.24 +1.5 2,341,661 + DvMF_1902 0.34 -0.2 2,341,756 - DvMF_1902 0.44 -0.3 2,342,002 - DvMF_1902 0.72 +0.7 2,342,002 - DvMF_1902 0.72 +1.1 2,342,598 - DvMF_1903 0.30 +0.4 2,342,845 - DvMF_1903 0.69 +0.1 2,343,032 - -0.4 2,343,145 + -0.9
Or see this region's nucleotide sequence