Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1872 and DvMF_1873 are separated by 410 nucleotides DvMF_1873 and DvMF_1874 are separated by 364 nucleotides
DvMF_1872: DvMF_1872 - Acetamidase/Formamidase (RefSeq), at 2,299,000 to 2,300,289
_1872
DvMF_1873: DvMF_1873 - Radical SAM domain protein (RefSeq), at 2,300,700 to 2,302,052
_1873
DvMF_1874: DvMF_1874 - hypothetical protein (RefSeq), at 2,302,417 to 2,304,678
_1874
Position (kb)
2300
2301
2302
2303 Strain fitness (log2 ratio)
-1
0
1
2 at 2299.816 kb on - strand, within DvMF_1872 at 2299.820 kb on - strand, within DvMF_1872 at 2299.983 kb on + strand, within DvMF_1872 at 2300.102 kb on - strand, within DvMF_1872 at 2300.159 kb on - strand, within DvMF_1872 at 2300.274 kb on - strand at 2300.451 kb on + strand at 2300.722 kb on + strand at 2300.792 kb on + strand at 2300.921 kb on - strand, within DvMF_1873 at 2301.076 kb on + strand, within DvMF_1873 at 2301.076 kb on + strand, within DvMF_1873 at 2301.076 kb on + strand, within DvMF_1873 at 2301.076 kb on + strand, within DvMF_1873 at 2301.084 kb on - strand, within DvMF_1873 at 2301.113 kb on + strand, within DvMF_1873 at 2301.197 kb on - strand, within DvMF_1873 at 2301.264 kb on + strand, within DvMF_1873 at 2301.320 kb on + strand, within DvMF_1873 at 2301.546 kb on - strand, within DvMF_1873 at 2301.654 kb on + strand, within DvMF_1873 at 2301.839 kb on + strand, within DvMF_1873 at 2301.841 kb on + strand, within DvMF_1873 at 2301.899 kb on + strand, within DvMF_1873 at 2302.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,299,816 - DvMF_1872 0.63 -0.7 2,299,820 - DvMF_1872 0.64 -0.4 2,299,983 + DvMF_1872 0.76 -0.8 2,300,102 - DvMF_1872 0.85 -0.3 2,300,159 - DvMF_1872 0.90 -0.7 2,300,274 - -0.3 2,300,451 + -0.6 2,300,722 + -0.3 2,300,792 + -0.3 2,300,921 - DvMF_1873 0.16 -1.4 2,301,076 + DvMF_1873 0.28 +2.2 2,301,076 + DvMF_1873 0.28 -0.6 2,301,076 + DvMF_1873 0.28 -0.7 2,301,076 + DvMF_1873 0.28 -0.1 2,301,084 - DvMF_1873 0.28 +0.3 2,301,113 + DvMF_1873 0.31 -0.2 2,301,197 - DvMF_1873 0.37 -0.2 2,301,264 + DvMF_1873 0.42 +0.3 2,301,320 + DvMF_1873 0.46 -1.0 2,301,546 - DvMF_1873 0.63 -1.1 2,301,654 + DvMF_1873 0.71 -0.3 2,301,839 + DvMF_1873 0.84 -0.5 2,301,841 + DvMF_1873 0.84 -0.6 2,301,899 + DvMF_1873 0.89 -0.8 2,302,036 - -0.9
Or see this region's nucleotide sequence