Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1870 and DvMF_1871 are separated by 230 nucleotides DvMF_1871 and DvMF_R0050 are separated by 249 nucleotides DvMF_R0050 and DvMF_1872 are separated by 75 nucleotides
DvMF_1870: DvMF_1870 - protein of unknown function DUF362 (RefSeq), at 2,296,434 to 2,297,339
_1870
DvMF_1871: DvMF_1871 - Rhodanese domain protein (RefSeq), at 2,297,570 to 2,298,598
_1871
DvMF_R0050: DvMF_R0050 - tRNA-Pro (RefSeq), at 2,298,848 to 2,298,924
_R0050
DvMF_1872: DvMF_1872 - Acetamidase/Formamidase (RefSeq), at 2,299,000 to 2,300,289
_1872
Position (kb)
2297
2298
2299 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2296.719 kb on - strand, within DvMF_1870 at 2296.795 kb on + strand, within DvMF_1870 at 2297.048 kb on + strand, within DvMF_1870 at 2297.056 kb on - strand, within DvMF_1870 at 2297.371 kb on + strand at 2297.385 kb on - strand at 2297.470 kb on - strand at 2297.934 kb on + strand, within DvMF_1871 at 2298.040 kb on - strand, within DvMF_1871 at 2298.612 kb on - strand at 2298.716 kb on - strand at 2298.743 kb on + strand at 2299.016 kb on + strand at 2299.103 kb on + strand at 2299.211 kb on + strand, within DvMF_1872 at 2299.234 kb on - strand, within DvMF_1872 at 2299.484 kb on - strand, within DvMF_1872
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,296,719 - DvMF_1870 0.31 -0.3 2,296,795 + DvMF_1870 0.40 +0.5 2,297,048 + DvMF_1870 0.68 -0.6 2,297,056 - DvMF_1870 0.69 -1.1 2,297,371 + -0.2 2,297,385 - -0.5 2,297,470 - -0.7 2,297,934 + DvMF_1871 0.35 +0.9 2,298,040 - DvMF_1871 0.46 -0.1 2,298,612 - -0.7 2,298,716 - +4.4 2,298,743 + -3.4 2,299,016 + -0.7 2,299,103 + -0.1 2,299,211 + DvMF_1872 0.16 +0.5 2,299,234 - DvMF_1872 0.18 -0.4 2,299,484 - DvMF_1872 0.38 +0.0
Or see this region's nucleotide sequence