Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1843

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1842 and DvMF_1843 are separated by 187 nucleotidesDvMF_1843 and DvMF_1844 are separated by 177 nucleotidesDvMF_1844 and DvMF_1845 overlap by 16 nucleotides DvMF_1842: DvMF_1842 - glycosyl transferase family 2 (RefSeq), at 2,252,273 to 2,254,927 _1842 DvMF_1843: DvMF_1843 - acetyltransferase (RefSeq), at 2,255,115 to 2,255,783 _1843 DvMF_1844: DvMF_1844 - acylneuraminate cytidylyltransferase (RefSeq), at 2,255,961 to 2,256,725 _1844 DvMF_1845: DvMF_1845 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,256,710 to 2,257,744 _1845 Position (kb) 2255 2256Strain fitness (log2 ratio) -1 0 1 2at 2254.139 kb on - strand, within DvMF_1842at 2254.280 kb on + strand, within DvMF_1842at 2254.403 kb on + strand, within DvMF_1842at 2254.503 kb on - strand, within DvMF_1842at 2254.665 kb on - strandat 2254.667 kb on - strandat 2254.837 kb on - strandat 2254.877 kb on + strandat 2255.091 kb on + strandat 2255.121 kb on + strandat 2255.126 kb on - strandat 2255.184 kb on + strand, within DvMF_1843at 2255.497 kb on + strand, within DvMF_1843at 2255.546 kb on - strand, within DvMF_1843at 2255.631 kb on + strand, within DvMF_1843at 2255.703 kb on - strand, within DvMF_1843at 2256.017 kb on - strandat 2256.125 kb on + strand, within DvMF_1844at 2256.130 kb on + strand, within DvMF_1844at 2256.142 kb on + strand, within DvMF_1844

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
2,254,139 - DvMF_1842 0.70 -0.3
2,254,280 + DvMF_1842 0.76 -0.9
2,254,403 + DvMF_1842 0.80 -0.5
2,254,503 - DvMF_1842 0.84 -0.9
2,254,665 - -0.5
2,254,667 - -1.3
2,254,837 - +0.2
2,254,877 + -1.2
2,255,091 + -0.1
2,255,121 + -1.0
2,255,126 - +0.3
2,255,184 + DvMF_1843 0.10 -1.3
2,255,497 + DvMF_1843 0.57 -0.7
2,255,546 - DvMF_1843 0.64 -1.0
2,255,631 + DvMF_1843 0.77 -0.8
2,255,703 - DvMF_1843 0.88 -0.4
2,256,017 - -0.7
2,256,125 + DvMF_1844 0.21 +2.1
2,256,130 + DvMF_1844 0.22 -1.5
2,256,142 + DvMF_1844 0.24 -0.2

Or see this region's nucleotide sequence