Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1833

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1832 and DvMF_1833 overlap by 1 nucleotidesDvMF_1833 and DvMF_1834 overlap by 4 nucleotides DvMF_1832: DvMF_1832 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,235,990 to 2,237,174 _1832 DvMF_1833: DvMF_1833 - hypothetical protein (RefSeq), at 2,237,174 to 2,238,373 _1833 DvMF_1834: DvMF_1834 - acylneuraminate cytidylyltransferase (RefSeq), at 2,238,370 to 2,240,433 _1834 Position (kb) 2237 2238 2239Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2236.205 kb on + strand, within DvMF_1832at 2236.255 kb on + strand, within DvMF_1832at 2236.359 kb on + strand, within DvMF_1832at 2236.402 kb on - strand, within DvMF_1832at 2236.423 kb on - strand, within DvMF_1832at 2236.625 kb on - strand, within DvMF_1832at 2236.668 kb on - strand, within DvMF_1832at 2236.725 kb on - strand, within DvMF_1832at 2236.786 kb on - strand, within DvMF_1832at 2236.800 kb on - strand, within DvMF_1832at 2236.840 kb on - strand, within DvMF_1832at 2236.853 kb on - strand, within DvMF_1832at 2237.307 kb on + strand, within DvMF_1833at 2237.315 kb on - strand, within DvMF_1833at 2237.459 kb on - strand, within DvMF_1833at 2237.533 kb on + strand, within DvMF_1833at 2237.645 kb on + strand, within DvMF_1833at 2237.648 kb on - strand, within DvMF_1833at 2237.653 kb on - strand, within DvMF_1833at 2237.709 kb on - strand, within DvMF_1833at 2237.882 kb on - strand, within DvMF_1833at 2237.908 kb on + strand, within DvMF_1833at 2238.100 kb on - strand, within DvMF_1833at 2238.207 kb on + strand, within DvMF_1833at 2238.285 kb on - strandat 2238.402 kb on + strandat 2238.422 kb on - strandat 2238.530 kb on + strandat 2238.894 kb on + strand, within DvMF_1834at 2238.895 kb on - strand, within DvMF_1834at 2238.902 kb on - strand, within DvMF_1834at 2238.902 kb on - strand, within DvMF_1834at 2238.914 kb on - strand, within DvMF_1834at 2239.149 kb on - strand, within DvMF_1834at 2239.252 kb on - strand, within DvMF_1834at 2239.305 kb on - strand, within DvMF_1834

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,236,205 + DvMF_1832 0.18 -0.8
2,236,255 + DvMF_1832 0.22 -0.6
2,236,359 + DvMF_1832 0.31 -0.8
2,236,402 - DvMF_1832 0.35 -0.7
2,236,423 - DvMF_1832 0.37 -2.3
2,236,625 - DvMF_1832 0.54 -0.3
2,236,668 - DvMF_1832 0.57 -0.8
2,236,725 - DvMF_1832 0.62 -0.4
2,236,786 - DvMF_1832 0.67 -1.0
2,236,800 - DvMF_1832 0.68 -0.5
2,236,840 - DvMF_1832 0.72 -1.2
2,236,853 - DvMF_1832 0.73 -0.5
2,237,307 + DvMF_1833 0.11 -0.8
2,237,315 - DvMF_1833 0.12 -0.8
2,237,459 - DvMF_1833 0.24 -0.5
2,237,533 + DvMF_1833 0.30 -1.0
2,237,645 + DvMF_1833 0.39 -0.7
2,237,648 - DvMF_1833 0.40 -0.5
2,237,653 - DvMF_1833 0.40 -0.8
2,237,709 - DvMF_1833 0.45 -0.4
2,237,882 - DvMF_1833 0.59 -0.1
2,237,908 + DvMF_1833 0.61 -1.2
2,238,100 - DvMF_1833 0.77 -3.6
2,238,207 + DvMF_1833 0.86 -1.1
2,238,285 - -0.6
2,238,402 + -0.6
2,238,422 - +0.0
2,238,530 + +2.1
2,238,894 + DvMF_1834 0.25 -0.4
2,238,895 - DvMF_1834 0.25 -0.7
2,238,902 - DvMF_1834 0.26 -1.3
2,238,902 - DvMF_1834 0.26 -0.6
2,238,914 - DvMF_1834 0.26 -0.2
2,239,149 - DvMF_1834 0.38 -0.6
2,239,252 - DvMF_1834 0.43 -1.7
2,239,305 - DvMF_1834 0.45 -0.9

Or see this region's nucleotide sequence