Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1829

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1828 and DvMF_1829 are separated by 567 nucleotidesDvMF_1829 and DvMF_1830 are separated by 346 nucleotides DvMF_1828: DvMF_1828 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,230,424 to 2,231,401 _1828 DvMF_1829: DvMF_1829 - extracellular solute-binding protein family 5 (RefSeq), at 2,231,969 to 2,233,531 _1829 DvMF_1830: DvMF_1830 - hypothetical protein (RefSeq), at 2,233,878 to 2,234,846 _1830 Position (kb) 2231 2232 2233 2234Strain fitness (log2 ratio) -2 -1 0 1 2at 2231.494 kb on - strandat 2231.696 kb on + strandat 2231.883 kb on + strandat 2232.017 kb on - strandat 2232.059 kb on - strandat 2232.137 kb on - strand, within DvMF_1829at 2232.336 kb on + strand, within DvMF_1829at 2232.471 kb on - strand, within DvMF_1829at 2232.588 kb on + strand, within DvMF_1829at 2232.596 kb on - strand, within DvMF_1829at 2232.596 kb on - strand, within DvMF_1829at 2232.663 kb on - strand, within DvMF_1829at 2232.663 kb on - strand, within DvMF_1829at 2232.760 kb on + strand, within DvMF_1829at 2232.812 kb on - strand, within DvMF_1829at 2232.973 kb on - strand, within DvMF_1829at 2233.200 kb on + strand, within DvMF_1829at 2233.251 kb on + strand, within DvMF_1829at 2233.414 kb on + strandat 2233.446 kb on + strandat 2233.653 kb on - strandat 2233.742 kb on - strandat 2233.790 kb on + strandat 2233.792 kb on + strandat 2234.130 kb on + strand, within DvMF_1830at 2234.180 kb on - strand, within DvMF_1830at 2234.325 kb on - strand, within DvMF_1830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,231,494 - -0.5
2,231,696 + +0.7
2,231,883 + +0.6
2,232,017 - -0.6
2,232,059 - -0.1
2,232,137 - DvMF_1829 0.11 -0.9
2,232,336 + DvMF_1829 0.23 -0.0
2,232,471 - DvMF_1829 0.32 -0.4
2,232,588 + DvMF_1829 0.40 +1.1
2,232,596 - DvMF_1829 0.40 -0.8
2,232,596 - DvMF_1829 0.40 -0.2
2,232,663 - DvMF_1829 0.44 -2.4
2,232,663 - DvMF_1829 0.44 -1.2
2,232,760 + DvMF_1829 0.51 -0.6
2,232,812 - DvMF_1829 0.54 -1.3
2,232,973 - DvMF_1829 0.64 -0.2
2,233,200 + DvMF_1829 0.79 -0.8
2,233,251 + DvMF_1829 0.82 -0.6
2,233,414 + -0.4
2,233,446 + -1.1
2,233,653 - -1.3
2,233,742 - -1.0
2,233,790 + -0.6
2,233,792 + -0.0
2,234,130 + DvMF_1830 0.26 +2.1
2,234,180 - DvMF_1830 0.31 +0.2
2,234,325 - DvMF_1830 0.46 -0.1

Or see this region's nucleotide sequence