Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1813 and DvMF_1814 are separated by 101 nucleotides DvMF_1814 and DvMF_1815 are separated by 403 nucleotides DvMF_1815 and DvMF_1816 are separated by 215 nucleotides DvMF_1816 and DvMF_1817 are separated by 407 nucleotides
DvMF_1813: DvMF_1813 - hypothetical protein (RefSeq), at 2,215,176 to 2,215,808
_1813
DvMF_1814: DvMF_1814 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 2,215,910 to 2,216,104
_1814
DvMF_1815: DvMF_1815 - hypothetical protein (RefSeq), at 2,216,508 to 2,216,786
_1815
DvMF_1816: DvMF_1816 - TPR repeat-containing protein (RefSeq), at 2,217,002 to 2,217,328
_1816
DvMF_1817: DvMF_1817 - chemotaxis protein CheX, putative (RefSeq), at 2,217,736 to 2,218,200
_1817
Position (kb)
2216
2217 Strain fitness (log2 ratio)
-2
-1
0
1 at 2215.628 kb on - strand, within DvMF_1813 at 2215.630 kb on + strand, within DvMF_1813 at 2215.832 kb on - strand at 2215.902 kb on - strand at 2216.090 kb on - strand at 2216.156 kb on - strand at 2216.184 kb on - strand at 2216.309 kb on - strand at 2216.507 kb on + strand at 2216.547 kb on - strand, within DvMF_1815 at 2216.714 kb on + strand, within DvMF_1815 at 2216.722 kb on - strand, within DvMF_1815 at 2216.740 kb on + strand, within DvMF_1815 at 2216.749 kb on + strand, within DvMF_1815 at 2216.766 kb on + strand at 2217.000 kb on - strand at 2217.073 kb on - strand, within DvMF_1816 at 2217.298 kb on + strand at 2217.354 kb on + strand at 2217.357 kb on - strand at 2217.432 kb on + strand at 2217.548 kb on - strand at 2217.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,215,628 - DvMF_1813 0.71 -0.7 2,215,630 + DvMF_1813 0.72 -1.0 2,215,832 - +0.1 2,215,902 - -0.7 2,216,090 - -0.3 2,216,156 - +0.2 2,216,184 - +0.4 2,216,309 - -1.0 2,216,507 + -0.5 2,216,547 - DvMF_1815 0.14 -0.2 2,216,714 + DvMF_1815 0.74 -1.6 2,216,722 - DvMF_1815 0.77 -0.1 2,216,740 + DvMF_1815 0.83 -0.7 2,216,749 + DvMF_1815 0.86 -0.6 2,216,766 + -0.2 2,217,000 - +0.4 2,217,073 - DvMF_1816 0.22 -0.7 2,217,298 + +0.4 2,217,354 + -0.1 2,217,357 - +1.1 2,217,432 + +0.3 2,217,548 - -2.0 2,217,581 - -0.4
Or see this region's nucleotide sequence