Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1784 and DvMF_1785 are separated by 420 nucleotides DvMF_1785 and DvMF_1786 are separated by 199 nucleotides DvMF_1786 and DvMF_1787 are separated by 224 nucleotides
DvMF_1784: DvMF_1784 - membrane-bound metal-dependent hydrolase (RefSeq), at 2,183,779 to 2,184,876
_1784
DvMF_1785: DvMF_1785 - no description, at 2,185,297 to 2,185,551
_1785
DvMF_1786: DvMF_1786 - protein of unknown function DUF523 (RefSeq), at 2,185,751 to 2,186,758
_1786
DvMF_1787: DvMF_1787 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,186,983 to 2,187,639
_1787
Position (kb)
2185
2186
2187 Strain fitness (log2 ratio)
-2
-1
0
1 at 2184.781 kb on + strand at 2184.781 kb on + strand at 2184.781 kb on + strand at 2184.836 kb on - strand at 2184.998 kb on + strand at 2185.342 kb on - strand, within DvMF_1785 at 2185.356 kb on + strand, within DvMF_1785 at 2185.364 kb on - strand, within DvMF_1785 at 2186.052 kb on - strand, within DvMF_1786 at 2186.388 kb on + strand, within DvMF_1786 at 2186.485 kb on + strand, within DvMF_1786 at 2186.485 kb on + strand, within DvMF_1786 at 2186.485 kb on + strand, within DvMF_1786 at 2186.618 kb on - strand, within DvMF_1786 at 2186.646 kb on - strand, within DvMF_1786 at 2186.715 kb on - strand at 2186.733 kb on - strand at 2186.937 kb on - strand at 2187.426 kb on + strand, within DvMF_1787 at 2187.434 kb on - strand, within DvMF_1787 at 2187.478 kb on + strand, within DvMF_1787 at 2187.527 kb on - strand, within DvMF_1787
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,184,781 + -0.3 2,184,781 + -1.0 2,184,781 + -0.3 2,184,836 - -0.2 2,184,998 + -0.9 2,185,342 - DvMF_1785 0.18 -0.5 2,185,356 + DvMF_1785 0.23 -0.4 2,185,364 - DvMF_1785 0.26 -2.3 2,186,052 - DvMF_1786 0.30 -0.6 2,186,388 + DvMF_1786 0.63 +1.2 2,186,485 + DvMF_1786 0.73 -0.4 2,186,485 + DvMF_1786 0.73 -0.1 2,186,485 + DvMF_1786 0.73 +0.7 2,186,618 - DvMF_1786 0.86 -1.0 2,186,646 - DvMF_1786 0.89 -0.6 2,186,715 - -0.5 2,186,733 - -1.0 2,186,937 - -1.2 2,187,426 + DvMF_1787 0.67 -0.5 2,187,434 - DvMF_1787 0.69 -1.1 2,187,478 + DvMF_1787 0.75 -0.4 2,187,527 - DvMF_1787 0.83 -1.2
Or see this region's nucleotide sequence