Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1781 and DvMF_1782 are separated by 204 nucleotides DvMF_1782 and DvMF_1783 are separated by 236 nucleotides DvMF_1783 and DvMF_1784 are separated by 310 nucleotides
DvMF_1781: DvMF_1781 - glycosyl transferase family 8 (RefSeq), at 2,181,199 to 2,182,047
_1781
DvMF_1782: DvMF_1782 - CheD (RefSeq), at 2,182,252 to 2,182,956
_1782
DvMF_1783: DvMF_1783 - histone family protein DNA-binding protein (RefSeq), at 2,183,193 to 2,183,468
_1783
DvMF_1784: DvMF_1784 - membrane-bound metal-dependent hydrolase (RefSeq), at 2,183,779 to 2,184,876
_1784
Position (kb)
2182
2183 Strain fitness (log2 ratio)
-2
-1
0
1 at 2181.252 kb on + strand at 2181.273 kb on + strand at 2181.472 kb on + strand, within DvMF_1781 at 2181.544 kb on - strand, within DvMF_1781 at 2181.671 kb on + strand, within DvMF_1781 at 2181.679 kb on - strand, within DvMF_1781 at 2181.679 kb on - strand, within DvMF_1781 at 2181.714 kb on - strand, within DvMF_1781 at 2181.793 kb on + strand, within DvMF_1781 at 2181.861 kb on + strand, within DvMF_1781 at 2182.093 kb on - strand at 2182.120 kb on + strand at 2182.238 kb on - strand at 2182.292 kb on - strand at 2182.480 kb on - strand, within DvMF_1782 at 2182.605 kb on + strand, within DvMF_1782 at 2182.863 kb on + strand, within DvMF_1782 at 2182.863 kb on - strand, within DvMF_1782 at 2182.920 kb on - strand at 2182.970 kb on + strand at 2182.971 kb on + strand at 2182.985 kb on - strand at 2183.035 kb on - strand at 2183.361 kb on - strand, within DvMF_1783 at 2183.397 kb on - strand, within DvMF_1783 at 2183.505 kb on + strand at 2183.626 kb on - strand at 2183.902 kb on - strand, within DvMF_1784 at 2183.903 kb on + strand, within DvMF_1784
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,181,252 + +1.5 2,181,273 + +0.1 2,181,472 + DvMF_1781 0.32 +0.3 2,181,544 - DvMF_1781 0.41 +0.4 2,181,671 + DvMF_1781 0.56 +1.1 2,181,679 - DvMF_1781 0.57 +0.0 2,181,679 - DvMF_1781 0.57 +0.6 2,181,714 - DvMF_1781 0.61 -0.1 2,181,793 + DvMF_1781 0.70 +0.1 2,181,861 + DvMF_1781 0.78 +0.6 2,182,093 - -0.3 2,182,120 + -0.3 2,182,238 - -0.8 2,182,292 - -2.1 2,182,480 - DvMF_1782 0.32 -0.7 2,182,605 + DvMF_1782 0.50 +0.1 2,182,863 + DvMF_1782 0.87 +0.5 2,182,863 - DvMF_1782 0.87 +0.4 2,182,920 - +0.1 2,182,970 + -0.7 2,182,971 + +0.1 2,182,985 - -0.0 2,183,035 - -0.6 2,183,361 - DvMF_1783 0.61 -1.1 2,183,397 - DvMF_1783 0.74 -0.1 2,183,505 + -0.5 2,183,626 - -0.9 2,183,902 - DvMF_1784 0.11 -0.6 2,183,903 + DvMF_1784 0.11 -1.8
Or see this region's nucleotide sequence