Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1782

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1781 and DvMF_1782 are separated by 204 nucleotidesDvMF_1782 and DvMF_1783 are separated by 236 nucleotidesDvMF_1783 and DvMF_1784 are separated by 310 nucleotides DvMF_1781: DvMF_1781 - glycosyl transferase family 8 (RefSeq), at 2,181,199 to 2,182,047 _1781 DvMF_1782: DvMF_1782 - CheD (RefSeq), at 2,182,252 to 2,182,956 _1782 DvMF_1783: DvMF_1783 - histone family protein DNA-binding protein (RefSeq), at 2,183,193 to 2,183,468 _1783 DvMF_1784: DvMF_1784 - membrane-bound metal-dependent hydrolase (RefSeq), at 2,183,779 to 2,184,876 _1784 Position (kb) 2182 2183Strain fitness (log2 ratio) -2 -1 0 1at 2181.252 kb on + strandat 2181.273 kb on + strandat 2181.472 kb on + strand, within DvMF_1781at 2181.544 kb on - strand, within DvMF_1781at 2181.671 kb on + strand, within DvMF_1781at 2181.679 kb on - strand, within DvMF_1781at 2181.679 kb on - strand, within DvMF_1781at 2181.714 kb on - strand, within DvMF_1781at 2181.793 kb on + strand, within DvMF_1781at 2181.861 kb on + strand, within DvMF_1781at 2182.093 kb on - strandat 2182.120 kb on + strandat 2182.238 kb on - strandat 2182.292 kb on - strandat 2182.480 kb on - strand, within DvMF_1782at 2182.605 kb on + strand, within DvMF_1782at 2182.863 kb on + strand, within DvMF_1782at 2182.863 kb on - strand, within DvMF_1782at 2182.920 kb on - strandat 2182.970 kb on + strandat 2182.971 kb on + strandat 2182.985 kb on - strandat 2183.035 kb on - strandat 2183.361 kb on - strand, within DvMF_1783at 2183.397 kb on - strand, within DvMF_1783at 2183.505 kb on + strandat 2183.626 kb on - strandat 2183.902 kb on - strand, within DvMF_1784at 2183.903 kb on + strand, within DvMF_1784

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
2,181,252 + +1.5
2,181,273 + +0.1
2,181,472 + DvMF_1781 0.32 +0.3
2,181,544 - DvMF_1781 0.41 +0.4
2,181,671 + DvMF_1781 0.56 +1.1
2,181,679 - DvMF_1781 0.57 +0.0
2,181,679 - DvMF_1781 0.57 +0.6
2,181,714 - DvMF_1781 0.61 -0.1
2,181,793 + DvMF_1781 0.70 +0.1
2,181,861 + DvMF_1781 0.78 +0.6
2,182,093 - -0.3
2,182,120 + -0.3
2,182,238 - -0.8
2,182,292 - -2.1
2,182,480 - DvMF_1782 0.32 -0.7
2,182,605 + DvMF_1782 0.50 +0.1
2,182,863 + DvMF_1782 0.87 +0.5
2,182,863 - DvMF_1782 0.87 +0.4
2,182,920 - +0.1
2,182,970 + -0.7
2,182,971 + +0.1
2,182,985 - -0.0
2,183,035 - -0.6
2,183,361 - DvMF_1783 0.61 -1.1
2,183,397 - DvMF_1783 0.74 -0.1
2,183,505 + -0.5
2,183,626 - -0.9
2,183,902 - DvMF_1784 0.11 -0.6
2,183,903 + DvMF_1784 0.11 -1.8

Or see this region's nucleotide sequence