Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1772

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1770 and DvMF_1771 are separated by 125 nucleotidesDvMF_1771 and DvMF_1772 are separated by 86 nucleotidesDvMF_1772 and DvMF_1773 are separated by 99 nucleotides DvMF_1770: DvMF_1770 - hypothetical protein (RefSeq), at 2,166,664 to 2,167,398 _1770 DvMF_1771: DvMF_1771 - hypothetical protein (RefSeq), at 2,167,524 to 2,167,814 _1771 DvMF_1772: DvMF_1772 - response regulator receiver protein (RefSeq), at 2,167,901 to 2,168,356 _1772 DvMF_1773: DvMF_1773 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 2,168,456 to 2,169,682 _1773 Position (kb) 2167 2168 2169Strain fitness (log2 ratio) -1 0 1at 2167.061 kb on + strand, within DvMF_1770at 2167.063 kb on - strand, within DvMF_1770at 2167.900 kb on + strandat 2168.096 kb on + strand, within DvMF_1772at 2168.237 kb on - strand, within DvMF_1772at 2168.303 kb on - strand, within DvMF_1772at 2169.026 kb on + strand, within DvMF_1773at 2169.080 kb on + strand, within DvMF_1773at 2169.140 kb on - strand, within DvMF_1773

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,167,061 + DvMF_1770 0.54 -1.4
2,167,063 - DvMF_1770 0.54 +0.3
2,167,900 + -0.2
2,168,096 + DvMF_1772 0.43 +0.2
2,168,237 - DvMF_1772 0.74 -0.0
2,168,303 - DvMF_1772 0.88 +0.2
2,169,026 + DvMF_1773 0.46 -0.8
2,169,080 + DvMF_1773 0.51 -0.3
2,169,140 - DvMF_1773 0.56 -0.3

Or see this region's nucleotide sequence