Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1721 and DvMF_1722 are separated by 500 nucleotides DvMF_1722 and DvMF_1723 are separated by 269 nucleotides DvMF_1723 and DvMF_1724 are separated by 109 nucleotides
DvMF_1721: DvMF_1721 - Phenylacetate--CoA ligase (RefSeq), at 2,104,713 to 2,106,008
_1721
DvMF_1722: DvMF_1722 - phosphoribosylamine--glycine ligase (RefSeq), at 2,106,509 to 2,107,786
_1722
DvMF_1723: DvMF_1723 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 2,108,056 to 2,108,556
_1723
DvMF_1724: DvMF_1724 - no description, at 2,108,666 to 2,108,806
_1724
Position (kb)
2106
2107
2108 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2105.604 kb on + strand, within DvMF_1721 at 2105.675 kb on + strand, within DvMF_1721 at 2105.847 kb on - strand, within DvMF_1721 at 2105.851 kb on + strand, within DvMF_1721 at 2105.932 kb on + strand at 2105.932 kb on + strand at 2105.932 kb on + strand at 2105.932 kb on + strand at 2105.940 kb on - strand at 2105.940 kb on - strand at 2105.944 kb on + strand at 2105.961 kb on + strand at 2106.547 kb on + strand at 2106.819 kb on - strand, within DvMF_1722 at 2106.882 kb on + strand, within DvMF_1722 at 2107.209 kb on + strand, within DvMF_1722 at 2107.273 kb on - strand, within DvMF_1722 at 2107.287 kb on - strand, within DvMF_1722 at 2107.867 kb on + strand at 2108.100 kb on - strand at 2108.102 kb on + strand at 2108.102 kb on + strand at 2108.102 kb on + strand at 2108.110 kb on - strand, within DvMF_1723 at 2108.110 kb on - strand, within DvMF_1723 at 2108.403 kb on - strand, within DvMF_1723 at 2108.413 kb on - strand, within DvMF_1723 at 2108.583 kb on + strand at 2108.583 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,105,604 + DvMF_1721 0.69 +0.6 2,105,675 + DvMF_1721 0.74 -0.5 2,105,847 - DvMF_1721 0.88 -0.6 2,105,851 + DvMF_1721 0.88 -0.8 2,105,932 + -0.3 2,105,932 + +0.1 2,105,932 + -0.9 2,105,932 + -0.9 2,105,940 - -1.2 2,105,940 - -0.5 2,105,944 + -1.5 2,105,961 + -0.3 2,106,547 + -4.2 2,106,819 - DvMF_1722 0.24 -3.8 2,106,882 + DvMF_1722 0.29 -3.8 2,107,209 + DvMF_1722 0.55 -2.6 2,107,273 - DvMF_1722 0.60 -2.1 2,107,287 - DvMF_1722 0.61 -3.6 2,107,867 + -0.3 2,108,100 - +2.3 2,108,102 + -1.7 2,108,102 + -1.5 2,108,102 + -1.4 2,108,110 - DvMF_1723 0.11 +1.3 2,108,110 - DvMF_1723 0.11 -0.8 2,108,403 - DvMF_1723 0.69 -2.0 2,108,413 - DvMF_1723 0.71 -1.6 2,108,583 + -0.3 2,108,583 + -0.3
Or see this region's nucleotide sequence