Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1722

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1721 and DvMF_1722 are separated by 500 nucleotidesDvMF_1722 and DvMF_1723 are separated by 269 nucleotidesDvMF_1723 and DvMF_1724 are separated by 109 nucleotides DvMF_1721: DvMF_1721 - Phenylacetate--CoA ligase (RefSeq), at 2,104,713 to 2,106,008 _1721 DvMF_1722: DvMF_1722 - phosphoribosylamine--glycine ligase (RefSeq), at 2,106,509 to 2,107,786 _1722 DvMF_1723: DvMF_1723 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 2,108,056 to 2,108,556 _1723 DvMF_1724: DvMF_1724 - no description, at 2,108,666 to 2,108,806 _1724 Position (kb) 2106 2107 2108Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2105.604 kb on + strand, within DvMF_1721at 2105.675 kb on + strand, within DvMF_1721at 2105.847 kb on - strand, within DvMF_1721at 2105.851 kb on + strand, within DvMF_1721at 2105.932 kb on + strandat 2105.932 kb on + strandat 2105.932 kb on + strandat 2105.932 kb on + strandat 2105.940 kb on - strandat 2105.940 kb on - strandat 2105.944 kb on + strandat 2105.961 kb on + strandat 2106.547 kb on + strandat 2106.819 kb on - strand, within DvMF_1722at 2106.882 kb on + strand, within DvMF_1722at 2107.209 kb on + strand, within DvMF_1722at 2107.273 kb on - strand, within DvMF_1722at 2107.287 kb on - strand, within DvMF_1722at 2107.867 kb on + strandat 2108.100 kb on - strandat 2108.102 kb on + strandat 2108.102 kb on + strandat 2108.102 kb on + strandat 2108.110 kb on - strand, within DvMF_1723at 2108.110 kb on - strand, within DvMF_1723at 2108.403 kb on - strand, within DvMF_1723at 2108.413 kb on - strand, within DvMF_1723at 2108.583 kb on + strandat 2108.583 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,105,604 + DvMF_1721 0.69 +0.6
2,105,675 + DvMF_1721 0.74 -0.5
2,105,847 - DvMF_1721 0.88 -0.6
2,105,851 + DvMF_1721 0.88 -0.8
2,105,932 + -0.3
2,105,932 + +0.1
2,105,932 + -0.9
2,105,932 + -0.9
2,105,940 - -1.2
2,105,940 - -0.5
2,105,944 + -1.5
2,105,961 + -0.3
2,106,547 + -4.2
2,106,819 - DvMF_1722 0.24 -3.8
2,106,882 + DvMF_1722 0.29 -3.8
2,107,209 + DvMF_1722 0.55 -2.6
2,107,273 - DvMF_1722 0.60 -2.1
2,107,287 - DvMF_1722 0.61 -3.6
2,107,867 + -0.3
2,108,100 - +2.3
2,108,102 + -1.7
2,108,102 + -1.5
2,108,102 + -1.4
2,108,110 - DvMF_1723 0.11 +1.3
2,108,110 - DvMF_1723 0.11 -0.8
2,108,403 - DvMF_1723 0.69 -2.0
2,108,413 - DvMF_1723 0.71 -1.6
2,108,583 + -0.3
2,108,583 + -0.3

Or see this region's nucleotide sequence