Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1628

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1627 and DvMF_1628 overlap by 4 nucleotidesDvMF_1628 and DvMF_1629 are separated by 84 nucleotides DvMF_1627: DvMF_1627 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,005,520 to 2,007,136 _1627 DvMF_1628: DvMF_1628 - efflux transporter, RND family, MFP subunit (RefSeq), at 2,007,133 to 2,008,284 _1628 DvMF_1629: DvMF_1629 - ABC transporter related (RefSeq), at 2,008,369 to 2,009,316 _1629 Position (kb) 2007 2008 2009Strain fitness (log2 ratio) -1 0 1at 2006.480 kb on - strand, within DvMF_1627at 2006.609 kb on + strand, within DvMF_1627at 2006.819 kb on + strand, within DvMF_1627at 2006.849 kb on - strand, within DvMF_1627at 2007.168 kb on + strandat 2007.177 kb on - strandat 2007.209 kb on - strandat 2007.283 kb on - strand, within DvMF_1628at 2007.349 kb on - strand, within DvMF_1628at 2007.686 kb on - strand, within DvMF_1628at 2007.765 kb on - strand, within DvMF_1628at 2007.772 kb on - strand, within DvMF_1628at 2007.799 kb on - strand, within DvMF_1628at 2008.068 kb on + strand, within DvMF_1628at 2008.428 kb on + strandat 2008.710 kb on + strand, within DvMF_1629at 2008.723 kb on + strand, within DvMF_1629at 2008.839 kb on + strand, within DvMF_1629at 2009.029 kb on - strand, within DvMF_1629at 2009.063 kb on - strand, within DvMF_1629at 2009.162 kb on - strand, within DvMF_1629at 2009.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,006,480 - DvMF_1627 0.59 -0.7
2,006,609 + DvMF_1627 0.67 -0.7
2,006,819 + DvMF_1627 0.80 +0.1
2,006,849 - DvMF_1627 0.82 -0.7
2,007,168 + -0.3
2,007,177 - -1.1
2,007,209 - -1.1
2,007,283 - DvMF_1628 0.13 -0.8
2,007,349 - DvMF_1628 0.19 -0.5
2,007,686 - DvMF_1628 0.48 -1.2
2,007,765 - DvMF_1628 0.55 -0.5
2,007,772 - DvMF_1628 0.55 -0.7
2,007,799 - DvMF_1628 0.58 -1.3
2,008,068 + DvMF_1628 0.81 -0.5
2,008,428 + -0.9
2,008,710 + DvMF_1629 0.36 -0.4
2,008,723 + DvMF_1629 0.37 -1.0
2,008,839 + DvMF_1629 0.50 -0.5
2,009,029 - DvMF_1629 0.70 -0.3
2,009,063 - DvMF_1629 0.73 -1.2
2,009,162 - DvMF_1629 0.84 -0.4
2,009,278 - -0.3

Or see this region's nucleotide sequence