Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1475 and DvMF_1476 are separated by 353 nucleotides DvMF_1476 and DvMF_1477 overlap by 14 nucleotides DvMF_1477 and DvMF_1478 are separated by 406 nucleotides
DvMF_1475: DvMF_1475 - hypothetical protein (RefSeq), at 1,808,491 to 1,808,943
_1475
DvMF_1476: DvMF_1476 - protein of unknown function DUF486 (RefSeq), at 1,809,297 to 1,809,656
_1476
DvMF_1477: DvMF_1477 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 1,809,643 to 1,811,835
_1477
DvMF_1478: DvMF_1478 - Extracellular ligand-binding receptor (RefSeq), at 1,812,242 to 1,813,459
_1478
Position (kb)
1809
1810
1811
1812 Strain fitness (log2 ratio)
-2
-1
0
1 at 1808.971 kb on - strand at 1808.983 kb on - strand at 1809.460 kb on + strand, within DvMF_1476 at 1809.699 kb on + strand at 1809.810 kb on + strand at 1809.830 kb on - strand at 1809.830 kb on - strand at 1809.904 kb on - strand, within DvMF_1477 at 1810.122 kb on - strand, within DvMF_1477 at 1810.327 kb on + strand, within DvMF_1477 at 1810.783 kb on - strand, within DvMF_1477 at 1810.858 kb on + strand, within DvMF_1477 at 1810.866 kb on - strand, within DvMF_1477 at 1810.945 kb on - strand, within DvMF_1477 at 1811.252 kb on + strand, within DvMF_1477 at 1811.392 kb on + strand, within DvMF_1477 at 1811.537 kb on + strand, within DvMF_1477 at 1811.967 kb on - strand at 1811.985 kb on + strand at 1811.993 kb on - strand at 1812.181 kb on + strand at 1812.267 kb on + strand at 1812.393 kb on - strand at 1812.417 kb on + strand, within DvMF_1478 at 1812.425 kb on - strand, within DvMF_1478 at 1812.494 kb on - strand, within DvMF_1478 at 1812.762 kb on + strand, within DvMF_1478
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,808,971 - -0.7 1,808,983 - -0.8 1,809,460 + DvMF_1476 0.45 -0.6 1,809,699 + +0.0 1,809,810 + +0.8 1,809,830 - +0.4 1,809,830 - +0.0 1,809,904 - DvMF_1477 0.12 +0.7 1,810,122 - DvMF_1477 0.22 +0.4 1,810,327 + DvMF_1477 0.31 +0.8 1,810,783 - DvMF_1477 0.52 +0.6 1,810,858 + DvMF_1477 0.55 +0.9 1,810,866 - DvMF_1477 0.56 +0.5 1,810,945 - DvMF_1477 0.59 +0.5 1,811,252 + DvMF_1477 0.73 -0.2 1,811,392 + DvMF_1477 0.80 +1.6 1,811,537 + DvMF_1477 0.86 +0.5 1,811,967 - +0.1 1,811,985 + +0.6 1,811,993 - -1.4 1,812,181 + -0.0 1,812,267 + -0.5 1,812,393 - +1.3 1,812,417 + DvMF_1478 0.14 -1.3 1,812,425 - DvMF_1478 0.15 -2.3 1,812,494 - DvMF_1478 0.21 +0.2 1,812,762 + DvMF_1478 0.43 -1.0
Or see this region's nucleotide sequence