Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1471 and DvMF_1472 are separated by 459 nucleotides DvMF_1472 and DvMF_1473 are separated by 147 nucleotides DvMF_1473 and DvMF_1474 are separated by 726 nucleotides
DvMF_1471: DvMF_1471 - hypothetical protein (RefSeq), at 1,802,483 to 1,803,349
_1471
DvMF_1472: DvMF_1472 - hypothetical protein (RefSeq), at 1,803,809 to 1,804,150
_1472
DvMF_1473: DvMF_1473 - anaerobic ribonucleoside triphosphate reductase (RefSeq), at 1,804,298 to 1,806,412
_1473
DvMF_1474: DvMF_1474 - flagellin domain protein (RefSeq), at 1,807,139 to 1,807,966
_1474
Position (kb)
1804
1805
1806
1807 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1804.091 kb on + strand, within DvMF_1472 at 1804.196 kb on + strand at 1804.226 kb on - strand at 1804.274 kb on - strand at 1804.465 kb on - strand at 1804.914 kb on + strand, within DvMF_1473 at 1805.175 kb on + strand, within DvMF_1473 at 1805.185 kb on + strand, within DvMF_1473 at 1805.194 kb on - strand, within DvMF_1473 at 1805.361 kb on + strand, within DvMF_1473 at 1805.450 kb on + strand, within DvMF_1473 at 1805.911 kb on + strand, within DvMF_1473 at 1806.291 kb on + strand at 1806.349 kb on + strand at 1806.674 kb on - strand at 1806.837 kb on - strand at 1807.069 kb on + strand at 1807.262 kb on - strand, within DvMF_1474
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,804,091 + DvMF_1472 0.82 -3.2 1,804,196 + -0.2 1,804,226 - +0.0 1,804,274 - +1.0 1,804,465 - -0.8 1,804,914 + DvMF_1473 0.29 -1.3 1,805,175 + DvMF_1473 0.41 -2.9 1,805,185 + DvMF_1473 0.42 -1.3 1,805,194 - DvMF_1473 0.42 -1.8 1,805,361 + DvMF_1473 0.50 -2.3 1,805,450 + DvMF_1473 0.54 -1.5 1,805,911 + DvMF_1473 0.76 -3.1 1,806,291 + -0.3 1,806,349 + -4.2 1,806,674 - -2.8 1,806,837 - +0.0 1,807,069 + -1.0 1,807,262 - DvMF_1474 0.15 -0.0
Or see this region's nucleotide sequence