Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1129

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1127 and DvMF_1128 are separated by 174 nucleotidesDvMF_1128 and DvMF_1129 are separated by 55 nucleotidesDvMF_1129 and DvMF_1130 are separated by 512 nucleotides DvMF_1127: DvMF_1127 - succinate dehydrogenase and fumarate reductase iron-sulfur protein (RefSeq), at 1,383,990 to 1,384,883 _1127 DvMF_1128: DvMF_1128 - YbaK/prolyl-tRNA synthetase associated region (RefSeq), at 1,385,058 to 1,385,573 _1128 DvMF_1129: DvMF_1129 - two component transcriptional regulator, LuxR family (RefSeq), at 1,385,629 to 1,386,324 _1129 DvMF_1130: DvMF_1130 - hypothetical protein (RefSeq), at 1,386,837 to 1,387,103 _1130 Position (kb) 1385 1386 1387Strain fitness (log2 ratio) -2 -1 0 1at 1384.830 kb on - strandat 1384.841 kb on - strandat 1384.850 kb on - strandat 1385.002 kb on - strandat 1385.116 kb on - strand, within DvMF_1128at 1385.116 kb on - strand, within DvMF_1128at 1385.116 kb on - strand, within DvMF_1128at 1385.221 kb on - strand, within DvMF_1128at 1385.221 kb on - strand, within DvMF_1128at 1385.576 kb on - strandat 1385.637 kb on + strandat 1385.640 kb on - strandat 1385.824 kb on + strand, within DvMF_1129at 1386.084 kb on - strand, within DvMF_1129at 1386.239 kb on - strand, within DvMF_1129at 1386.330 kb on + strandat 1386.390 kb on + strandat 1386.390 kb on + strandat 1386.546 kb on - strandat 1386.580 kb on - strandat 1386.772 kb on - strandat 1386.952 kb on - strand, within DvMF_1130at 1387.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,384,830 - -0.9
1,384,841 - -1.3
1,384,850 - -1.0
1,385,002 - -0.4
1,385,116 - DvMF_1128 0.11 -0.9
1,385,116 - DvMF_1128 0.11 -1.4
1,385,116 - DvMF_1128 0.11 -1.6
1,385,221 - DvMF_1128 0.32 +0.4
1,385,221 - DvMF_1128 0.32 -0.5
1,385,576 - -0.7
1,385,637 + +0.4
1,385,640 - -0.6
1,385,824 + DvMF_1129 0.28 +0.0
1,386,084 - DvMF_1129 0.65 +0.0
1,386,239 - DvMF_1129 0.88 -0.3
1,386,330 + +0.4
1,386,390 + -0.9
1,386,390 + -0.9
1,386,546 - -1.6
1,386,580 - -1.0
1,386,772 - -1.6
1,386,952 - DvMF_1130 0.43 -0.7
1,387,175 - -2.2

Or see this region's nucleotide sequence