Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1127 and DvMF_1128 are separated by 174 nucleotides DvMF_1128 and DvMF_1129 are separated by 55 nucleotides DvMF_1129 and DvMF_1130 are separated by 512 nucleotides
DvMF_1127: DvMF_1127 - succinate dehydrogenase and fumarate reductase iron-sulfur protein (RefSeq), at 1,383,990 to 1,384,883
_1127
DvMF_1128: DvMF_1128 - YbaK/prolyl-tRNA synthetase associated region (RefSeq), at 1,385,058 to 1,385,573
_1128
DvMF_1129: DvMF_1129 - two component transcriptional regulator, LuxR family (RefSeq), at 1,385,629 to 1,386,324
_1129
DvMF_1130: DvMF_1130 - hypothetical protein (RefSeq), at 1,386,837 to 1,387,103
_1130
Position (kb)
1385
1386
1387 Strain fitness (log2 ratio)
-2
-1
0
1 at 1384.830 kb on - strand at 1384.841 kb on - strand at 1384.850 kb on - strand at 1385.002 kb on - strand at 1385.116 kb on - strand, within DvMF_1128 at 1385.116 kb on - strand, within DvMF_1128 at 1385.116 kb on - strand, within DvMF_1128 at 1385.221 kb on - strand, within DvMF_1128 at 1385.221 kb on - strand, within DvMF_1128 at 1385.576 kb on - strand at 1385.637 kb on + strand at 1385.640 kb on - strand at 1385.824 kb on + strand, within DvMF_1129 at 1386.084 kb on - strand, within DvMF_1129 at 1386.239 kb on - strand, within DvMF_1129 at 1386.330 kb on + strand at 1386.390 kb on + strand at 1386.390 kb on + strand at 1386.546 kb on - strand at 1386.580 kb on - strand at 1386.772 kb on - strand at 1386.952 kb on - strand, within DvMF_1130 at 1387.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,384,830 - -0.9 1,384,841 - -1.3 1,384,850 - -1.0 1,385,002 - -0.4 1,385,116 - DvMF_1128 0.11 -0.9 1,385,116 - DvMF_1128 0.11 -1.4 1,385,116 - DvMF_1128 0.11 -1.6 1,385,221 - DvMF_1128 0.32 +0.4 1,385,221 - DvMF_1128 0.32 -0.5 1,385,576 - -0.7 1,385,637 + +0.4 1,385,640 - -0.6 1,385,824 + DvMF_1129 0.28 +0.0 1,386,084 - DvMF_1129 0.65 +0.0 1,386,239 - DvMF_1129 0.88 -0.3 1,386,330 + +0.4 1,386,390 + -0.9 1,386,390 + -0.9 1,386,546 - -1.6 1,386,580 - -1.0 1,386,772 - -1.6 1,386,952 - DvMF_1130 0.43 -0.7 1,387,175 - -2.2
Or see this region's nucleotide sequence