Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1102

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1101 and DvMF_1102 are separated by 348 nucleotidesDvMF_1102 and DvMF_1103 are separated by 382 nucleotidesDvMF_1103 and DvMF_1104 are separated by 23 nucleotides DvMF_1101: DvMF_1101 - extracellular solute-binding protein family 3 (RefSeq), at 1,349,042 to 1,349,929 _1101 DvMF_1102: DvMF_1102 - putative PAS/PAC sensor protein (RefSeq), at 1,350,278 to 1,352,341 _1102 DvMF_1103: DvMF_1103 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 1,352,724 to 1,353,293 _1103 DvMF_1104: DvMF_1104 - hypothetical protein (RefSeq), at 1,353,317 to 1,353,988 _1104 Position (kb) 1350 1351 1352 1353Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1349.298 kb on + strand, within DvMF_1101at 1349.401 kb on + strand, within DvMF_1101at 1349.416 kb on + strand, within DvMF_1101at 1349.504 kb on - strand, within DvMF_1101at 1349.638 kb on - strand, within DvMF_1101at 1349.752 kb on + strand, within DvMF_1101at 1349.913 kb on - strandat 1349.979 kb on + strandat 1349.987 kb on - strandat 1350.026 kb on - strandat 1350.104 kb on + strandat 1350.112 kb on - strandat 1350.207 kb on + strandat 1350.452 kb on + strandat 1350.914 kb on - strand, within DvMF_1102at 1350.980 kb on + strand, within DvMF_1102at 1351.163 kb on + strand, within DvMF_1102at 1351.186 kb on - strand, within DvMF_1102at 1351.299 kb on - strand, within DvMF_1102at 1351.412 kb on + strand, within DvMF_1102at 1352.005 kb on - strand, within DvMF_1102at 1352.230 kb on - strandat 1352.618 kb on - strandat 1352.740 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,349,298 + DvMF_1101 0.29 -2.4
1,349,401 + DvMF_1101 0.40 -2.8
1,349,416 + DvMF_1101 0.42 -3.5
1,349,504 - DvMF_1101 0.52 -0.3
1,349,638 - DvMF_1101 0.67 -2.7
1,349,752 + DvMF_1101 0.80 -2.3
1,349,913 - +1.3
1,349,979 + -0.4
1,349,987 - +3.9
1,350,026 - -1.0
1,350,104 + -1.2
1,350,112 - +0.1
1,350,207 + -1.1
1,350,452 + +0.5
1,350,914 - DvMF_1102 0.31 +0.6
1,350,980 + DvMF_1102 0.34 +0.1
1,351,163 + DvMF_1102 0.43 -0.7
1,351,186 - DvMF_1102 0.44 -0.2
1,351,299 - DvMF_1102 0.49 +0.3
1,351,412 + DvMF_1102 0.55 -0.5
1,352,005 - DvMF_1102 0.84 +0.3
1,352,230 - -0.6
1,352,618 - -1.1
1,352,740 + -2.3

Or see this region's nucleotide sequence