Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1101 and DvMF_1102 are separated by 348 nucleotides DvMF_1102 and DvMF_1103 are separated by 382 nucleotides DvMF_1103 and DvMF_1104 are separated by 23 nucleotides
DvMF_1101: DvMF_1101 - extracellular solute-binding protein family 3 (RefSeq), at 1,349,042 to 1,349,929
_1101
DvMF_1102: DvMF_1102 - putative PAS/PAC sensor protein (RefSeq), at 1,350,278 to 1,352,341
_1102
DvMF_1103: DvMF_1103 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 1,352,724 to 1,353,293
_1103
DvMF_1104: DvMF_1104 - hypothetical protein (RefSeq), at 1,353,317 to 1,353,988
_1104
Position (kb)
1350
1351
1352
1353 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1349.298 kb on + strand, within DvMF_1101 at 1349.401 kb on + strand, within DvMF_1101 at 1349.416 kb on + strand, within DvMF_1101 at 1349.504 kb on - strand, within DvMF_1101 at 1349.638 kb on - strand, within DvMF_1101 at 1349.752 kb on + strand, within DvMF_1101 at 1349.913 kb on - strand at 1349.979 kb on + strand at 1349.987 kb on - strand at 1350.026 kb on - strand at 1350.104 kb on + strand at 1350.112 kb on - strand at 1350.207 kb on + strand at 1350.452 kb on + strand at 1350.914 kb on - strand, within DvMF_1102 at 1350.980 kb on + strand, within DvMF_1102 at 1351.163 kb on + strand, within DvMF_1102 at 1351.186 kb on - strand, within DvMF_1102 at 1351.299 kb on - strand, within DvMF_1102 at 1351.412 kb on + strand, within DvMF_1102 at 1352.005 kb on - strand, within DvMF_1102 at 1352.230 kb on - strand at 1352.618 kb on - strand at 1352.740 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,349,298 + DvMF_1101 0.29 -2.4 1,349,401 + DvMF_1101 0.40 -2.8 1,349,416 + DvMF_1101 0.42 -3.5 1,349,504 - DvMF_1101 0.52 -0.3 1,349,638 - DvMF_1101 0.67 -2.7 1,349,752 + DvMF_1101 0.80 -2.3 1,349,913 - +1.3 1,349,979 + -0.4 1,349,987 - +3.9 1,350,026 - -1.0 1,350,104 + -1.2 1,350,112 - +0.1 1,350,207 + -1.1 1,350,452 + +0.5 1,350,914 - DvMF_1102 0.31 +0.6 1,350,980 + DvMF_1102 0.34 +0.1 1,351,163 + DvMF_1102 0.43 -0.7 1,351,186 - DvMF_1102 0.44 -0.2 1,351,299 - DvMF_1102 0.49 +0.3 1,351,412 + DvMF_1102 0.55 -0.5 1,352,005 - DvMF_1102 0.84 +0.3 1,352,230 - -0.6 1,352,618 - -1.1 1,352,740 + -2.3
Or see this region's nucleotide sequence