Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1080 and DvMF_1081 are separated by 497 nucleotides DvMF_1081 and DvMF_1082 are separated by 142 nucleotides DvMF_1082 and DvMF_1083 are separated by 391 nucleotides
DvMF_1080: DvMF_1080 - hypothetical protein (RefSeq), at 1,319,828 to 1,320,598
_1080
DvMF_1081: DvMF_1081 - hypothetical protein (RefSeq), at 1,321,096 to 1,321,299
_1081
DvMF_1082: DvMF_1082 - hypothetical protein (RefSeq), at 1,321,442 to 1,321,846
_1082
DvMF_1083: DvMF_1083 - TPR repeat-containing protein (RefSeq), at 1,322,238 to 1,322,894
_1083
Position (kb)
1321
1322 Strain fitness (log2 ratio)
-1
0
1 at 1320.110 kb on + strand, within DvMF_1080 at 1320.110 kb on + strand, within DvMF_1080 at 1320.146 kb on - strand, within DvMF_1080 at 1320.232 kb on - strand, within DvMF_1080 at 1320.233 kb on - strand, within DvMF_1080 at 1320.638 kb on - strand at 1320.701 kb on - strand at 1320.793 kb on - strand at 1320.929 kb on + strand at 1320.950 kb on - strand at 1321.045 kb on - strand at 1321.145 kb on + strand, within DvMF_1081 at 1321.578 kb on - strand, within DvMF_1082 at 1321.786 kb on + strand, within DvMF_1082 at 1321.832 kb on - strand at 1321.897 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,320,110 + DvMF_1080 0.37 -0.5 1,320,110 + DvMF_1080 0.37 -0.4 1,320,146 - DvMF_1080 0.41 -0.4 1,320,232 - DvMF_1080 0.52 -0.1 1,320,233 - DvMF_1080 0.53 +0.5 1,320,638 - -0.3 1,320,701 - -1.5 1,320,793 - -0.4 1,320,929 + -1.7 1,320,950 - -0.9 1,321,045 - -0.9 1,321,145 + DvMF_1081 0.24 -0.1 1,321,578 - DvMF_1082 0.34 -0.7 1,321,786 + DvMF_1082 0.85 -0.6 1,321,832 - -1.1 1,321,897 + +0.2
Or see this region's nucleotide sequence