Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0991 and DvMF_0992 are separated by 96 nucleotides DvMF_0992 and DvMF_0993 are separated by 206 nucleotides DvMF_0993 and DvMF_0994 are separated by 209 nucleotides DvMF_0994 and DvMF_0995 are separated by 144 nucleotides
DvMF_0991: DvMF_0991 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 1,204,387 to 1,206,210
_0991
DvMF_0992: DvMF_0992 - hypothetical protein (RefSeq), at 1,206,307 to 1,206,990
_0992
DvMF_0993: DvMF_0993 - transcriptional regulator, Crp/Fnr family (RefSeq), at 1,207,197 to 1,207,886
_0993
DvMF_0994: DvMF_0994 - hypothetical protein (RefSeq), at 1,208,096 to 1,208,602
_0994
DvMF_0995: DvMF_0995 - metal dependent phosphohydrolase (RefSeq), at 1,208,747 to 1,210,003
_0995
Position (kb)
1207
1208 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1206.205 kb on + strand at 1206.205 kb on + strand at 1206.293 kb on + strand at 1206.322 kb on - strand at 1206.741 kb on + strand, within DvMF_0992 at 1206.749 kb on - strand, within DvMF_0992 at 1206.804 kb on + strand, within DvMF_0992 at 1206.811 kb on - strand, within DvMF_0992 at 1207.157 kb on + strand at 1207.354 kb on + strand, within DvMF_0993 at 1207.520 kb on + strand, within DvMF_0993 at 1207.545 kb on + strand, within DvMF_0993 at 1207.620 kb on - strand, within DvMF_0993 at 1207.799 kb on - strand, within DvMF_0993 at 1208.259 kb on + strand, within DvMF_0994 at 1208.259 kb on + strand, within DvMF_0994 at 1208.561 kb on + strand at 1208.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,206,205 + -0.7 1,206,205 + -1.7 1,206,293 + -1.1 1,206,322 - -0.8 1,206,741 + DvMF_0992 0.63 -3.9 1,206,749 - DvMF_0992 0.65 +0.4 1,206,804 + DvMF_0992 0.73 -1.3 1,206,811 - DvMF_0992 0.74 +0.3 1,207,157 + -1.8 1,207,354 + DvMF_0993 0.23 -0.1 1,207,520 + DvMF_0993 0.47 -0.3 1,207,545 + DvMF_0993 0.50 +2.1 1,207,620 - DvMF_0993 0.61 -0.7 1,207,799 - DvMF_0993 0.87 -0.6 1,208,259 + DvMF_0994 0.32 -1.9 1,208,259 + DvMF_0994 0.32 -0.8 1,208,561 + -0.8 1,208,729 - -0.6
Or see this region's nucleotide sequence