Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0929 and DvMF_0930 are separated by 359 nucleotides DvMF_0930 and DvMF_0931 are separated by 153 nucleotides
DvMF_0929: DvMF_0929 - transcriptional regulator, LuxR family (RefSeq), at 1,126,202 to 1,127,698
_0929
DvMF_0930: DvMF_0930 - cytoplasmic chaperone TorD family protein (RefSeq), at 1,128,058 to 1,128,780
_0930
DvMF_0931: DvMF_0931 - molybdopterin oxidoreductase (RefSeq), at 1,128,934 to 1,131,165
_0931
Position (kb)
1128
1129 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1127.345 kb on + strand, within DvMF_0929 at 1127.352 kb on + strand, within DvMF_0929 at 1127.353 kb on - strand, within DvMF_0929 at 1127.449 kb on + strand, within DvMF_0929 at 1127.683 kb on - strand at 1128.023 kb on - strand at 1128.342 kb on - strand, within DvMF_0930 at 1128.490 kb on + strand, within DvMF_0930 at 1128.491 kb on + strand, within DvMF_0930 at 1128.543 kb on + strand, within DvMF_0930 at 1128.622 kb on - strand, within DvMF_0930 at 1128.634 kb on + strand, within DvMF_0930 at 1129.010 kb on + strand at 1129.110 kb on + strand at 1129.125 kb on + strand at 1129.168 kb on + strand, within DvMF_0931 at 1129.240 kb on + strand, within DvMF_0931 at 1129.299 kb on - strand, within DvMF_0931 at 1129.425 kb on + strand, within DvMF_0931 at 1129.575 kb on - strand, within DvMF_0931 at 1129.582 kb on - strand, within DvMF_0931 at 1129.604 kb on - strand, within DvMF_0931 at 1129.668 kb on + strand, within DvMF_0931 at 1129.694 kb on - strand, within DvMF_0931 at 1129.736 kb on + strand, within DvMF_0931
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,127,345 + DvMF_0929 0.76 -0.4 1,127,352 + DvMF_0929 0.77 -0.4 1,127,353 - DvMF_0929 0.77 -0.4 1,127,449 + DvMF_0929 0.83 +0.4 1,127,683 - -1.2 1,128,023 - -0.8 1,128,342 - DvMF_0930 0.39 -0.8 1,128,490 + DvMF_0930 0.60 -0.2 1,128,491 + DvMF_0930 0.60 +2.2 1,128,543 + DvMF_0930 0.67 -0.1 1,128,622 - DvMF_0930 0.78 -0.3 1,128,634 + DvMF_0930 0.80 -0.3 1,129,010 + -0.6 1,129,110 + -0.9 1,129,125 + -4.4 1,129,168 + DvMF_0931 0.10 -0.7 1,129,240 + DvMF_0931 0.14 -0.3 1,129,299 - DvMF_0931 0.16 -2.4 1,129,425 + DvMF_0931 0.22 +1.0 1,129,575 - DvMF_0931 0.29 -1.4 1,129,582 - DvMF_0931 0.29 +0.8 1,129,604 - DvMF_0931 0.30 +0.9 1,129,668 + DvMF_0931 0.33 -0.6 1,129,694 - DvMF_0931 0.34 +0.2 1,129,736 + DvMF_0931 0.36 -1.2
Or see this region's nucleotide sequence