Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0860

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0858 and DvMF_0859 overlap by 4 nucleotidesDvMF_0859 and DvMF_0860 are separated by 190 nucleotidesDvMF_0860 and DvMF_0861 are separated by 89 nucleotidesDvMF_0861 and DvMF_0862 overlap by 14 nucleotides DvMF_0858: DvMF_0858 - hypothetical protein (RefSeq), at 1,035,310 to 1,035,669 _0858 DvMF_0859: DvMF_0859 - protein of unknown function DUF340 membrane (RefSeq), at 1,035,666 to 1,036,271 _0859 DvMF_0860: DvMF_0860 - extracellular solute-binding protein family 3 (RefSeq), at 1,036,462 to 1,037,202 _0860 DvMF_0861: DvMF_0861 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,037,292 to 1,038,083 _0861 DvMF_0862: DvMF_0862 - ABC transporter related (RefSeq), at 1,038,070 to 1,038,816 _0862 Position (kb) 1036 1037 1038Strain fitness (log2 ratio) -2 -1 0 1at 1036.023 kb on - strand, within DvMF_0859at 1036.430 kb on + strandat 1036.451 kb on - strandat 1036.766 kb on + strand, within DvMF_0860at 1036.784 kb on + strand, within DvMF_0860at 1037.124 kb on - strand, within DvMF_0860at 1037.236 kb on - strandat 1037.302 kb on - strandat 1037.434 kb on + strand, within DvMF_0861at 1037.434 kb on + strand, within DvMF_0861at 1037.476 kb on + strand, within DvMF_0861at 1037.644 kb on - strand, within DvMF_0861at 1037.709 kb on - strand, within DvMF_0861at 1037.805 kb on - strand, within DvMF_0861at 1037.819 kb on + strand, within DvMF_0861at 1037.907 kb on - strand, within DvMF_0861at 1038.023 kb on + strandat 1038.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,036,023 - DvMF_0859 0.59 +0.3
1,036,430 + -0.8
1,036,451 - -0.0
1,036,766 + DvMF_0860 0.41 +0.1
1,036,784 + DvMF_0860 0.43 +0.1
1,037,124 - DvMF_0860 0.89 -0.0
1,037,236 - +0.1
1,037,302 - +0.3
1,037,434 + DvMF_0861 0.18 -1.1
1,037,434 + DvMF_0861 0.18 -1.7
1,037,476 + DvMF_0861 0.23 -1.2
1,037,644 - DvMF_0861 0.44 -1.5
1,037,709 - DvMF_0861 0.53 -0.7
1,037,805 - DvMF_0861 0.65 -1.3
1,037,819 + DvMF_0861 0.67 -1.7
1,037,907 - DvMF_0861 0.78 -1.8
1,038,023 + -2.0
1,038,031 - -1.2

Or see this region's nucleotide sequence