Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0858 and DvMF_0859 overlap by 4 nucleotides DvMF_0859 and DvMF_0860 are separated by 190 nucleotides DvMF_0860 and DvMF_0861 are separated by 89 nucleotides DvMF_0861 and DvMF_0862 overlap by 14 nucleotides
DvMF_0858: DvMF_0858 - hypothetical protein (RefSeq), at 1,035,310 to 1,035,669
_0858
DvMF_0859: DvMF_0859 - protein of unknown function DUF340 membrane (RefSeq), at 1,035,666 to 1,036,271
_0859
DvMF_0860: DvMF_0860 - extracellular solute-binding protein family 3 (RefSeq), at 1,036,462 to 1,037,202
_0860
DvMF_0861: DvMF_0861 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,037,292 to 1,038,083
_0861
DvMF_0862: DvMF_0862 - ABC transporter related (RefSeq), at 1,038,070 to 1,038,816
_0862
Position (kb)
1036
1037
1038 Strain fitness (log2 ratio)
-2
-1
0
1 at 1036.023 kb on - strand, within DvMF_0859 at 1036.430 kb on + strand at 1036.451 kb on - strand at 1036.766 kb on + strand, within DvMF_0860 at 1036.784 kb on + strand, within DvMF_0860 at 1037.124 kb on - strand, within DvMF_0860 at 1037.236 kb on - strand at 1037.302 kb on - strand at 1037.434 kb on + strand, within DvMF_0861 at 1037.434 kb on + strand, within DvMF_0861 at 1037.476 kb on + strand, within DvMF_0861 at 1037.644 kb on - strand, within DvMF_0861 at 1037.709 kb on - strand, within DvMF_0861 at 1037.805 kb on - strand, within DvMF_0861 at 1037.819 kb on + strand, within DvMF_0861 at 1037.907 kb on - strand, within DvMF_0861 at 1038.023 kb on + strand at 1038.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,036,023 - DvMF_0859 0.59 +0.3 1,036,430 + -0.8 1,036,451 - -0.0 1,036,766 + DvMF_0860 0.41 +0.1 1,036,784 + DvMF_0860 0.43 +0.1 1,037,124 - DvMF_0860 0.89 -0.0 1,037,236 - +0.1 1,037,302 - +0.3 1,037,434 + DvMF_0861 0.18 -1.1 1,037,434 + DvMF_0861 0.18 -1.7 1,037,476 + DvMF_0861 0.23 -1.2 1,037,644 - DvMF_0861 0.44 -1.5 1,037,709 - DvMF_0861 0.53 -0.7 1,037,805 - DvMF_0861 0.65 -1.3 1,037,819 + DvMF_0861 0.67 -1.7 1,037,907 - DvMF_0861 0.78 -1.8 1,038,023 + -2.0 1,038,031 - -1.2
Or see this region's nucleotide sequence