Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0857 and DvMF_0858 are separated by 499 nucleotides DvMF_0858 and DvMF_0859 overlap by 4 nucleotides DvMF_0859 and DvMF_0860 are separated by 190 nucleotides
DvMF_0857: DvMF_0857 - Cupin 2 conserved barrel domain protein (RefSeq), at 1,034,493 to 1,034,810
_0857
DvMF_0858: DvMF_0858 - hypothetical protein (RefSeq), at 1,035,310 to 1,035,669
_0858
DvMF_0859: DvMF_0859 - protein of unknown function DUF340 membrane (RefSeq), at 1,035,666 to 1,036,271
_0859
DvMF_0860: DvMF_0860 - extracellular solute-binding protein family 3 (RefSeq), at 1,036,462 to 1,037,202
_0860
Position (kb)
1035
1036
1037 Strain fitness (log2 ratio)
-1
0
1 at 1034.677 kb on - strand, within DvMF_0857 at 1034.779 kb on - strand at 1036.023 kb on - strand, within DvMF_0859 at 1036.430 kb on + strand at 1036.451 kb on - strand at 1036.766 kb on + strand, within DvMF_0860 at 1036.784 kb on + strand, within DvMF_0860 at 1037.124 kb on - strand, within DvMF_0860 at 1037.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,034,677 - DvMF_0857 0.58 -0.9 1,034,779 - +0.5 1,036,023 - DvMF_0859 0.59 +0.3 1,036,430 + -0.8 1,036,451 - -0.0 1,036,766 + DvMF_0860 0.41 +0.1 1,036,784 + DvMF_0860 0.43 +0.1 1,037,124 - DvMF_0860 0.89 -0.0 1,037,236 - +0.1
Or see this region's nucleotide sequence