Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0822 and DvMF_0823 are separated by 268 nucleotides DvMF_0823 and DvMF_0824 are separated by 7 nucleotides
DvMF_0822: DvMF_0822 - GTP-binding protein TypA (RefSeq), at 991,207 to 993,045
_0822
DvMF_0823: DvMF_0823 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 993,314 to 994,684
_0823
DvMF_0824: DvMF_0824 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 994,692 to 996,542
_0824
Position (kb)
993
994
995 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 992.626 kb on + strand, within DvMF_0822 at 992.734 kb on - strand, within DvMF_0822 at 992.779 kb on + strand, within DvMF_0822 at 992.787 kb on - strand, within DvMF_0822 at 992.987 kb on - strand at 993.068 kb on - strand at 993.081 kb on + strand at 993.304 kb on + strand at 993.900 kb on - strand, within DvMF_0823 at 993.983 kb on - strand, within DvMF_0823 at 993.983 kb on - strand, within DvMF_0823 at 994.069 kb on - strand, within DvMF_0823 at 994.376 kb on + strand, within DvMF_0823 at 994.392 kb on - strand, within DvMF_0823 at 994.511 kb on - strand, within DvMF_0823 at 994.545 kb on - strand, within DvMF_0823 at 994.687 kb on - strand at 995.084 kb on + strand, within DvMF_0824 at 995.305 kb on + strand, within DvMF_0824 at 995.313 kb on - strand, within DvMF_0824 at 995.560 kb on - strand, within DvMF_0824
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 992,626 + DvMF_0822 0.77 -1.2 992,734 - DvMF_0822 0.83 -0.5 992,779 + DvMF_0822 0.85 +0.3 992,787 - DvMF_0822 0.86 -0.8 992,987 - -0.4 993,068 - -1.0 993,081 + -0.7 993,304 + -0.4 993,900 - DvMF_0823 0.43 -0.3 993,983 - DvMF_0823 0.49 -0.5 993,983 - DvMF_0823 0.49 -0.5 994,069 - DvMF_0823 0.55 -1.1 994,376 + DvMF_0823 0.77 -3.0 994,392 - DvMF_0823 0.79 -0.5 994,511 - DvMF_0823 0.87 -0.3 994,545 - DvMF_0823 0.90 +0.0 994,687 - -0.5 995,084 + DvMF_0824 0.21 -0.4 995,305 + DvMF_0824 0.33 -0.4 995,313 - DvMF_0824 0.34 -0.8 995,560 - DvMF_0824 0.47 -1.1
Or see this region's nucleotide sequence