Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0777

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0775 and DvMF_0776 are separated by 10 nucleotidesDvMF_0776 and DvMF_0777 overlap by 4 nucleotidesDvMF_0777 and DvMF_0778 are separated by 135 nucleotides DvMF_0775: DvMF_0775 - response regulator receiver protein (RefSeq), at 931,315 to 931,683 _0775 DvMF_0776: DvMF_0776 - CheW protein (RefSeq), at 931,694 to 932,380 _0776 DvMF_0777: DvMF_0777 - Cobyrinic acid ac-diamide synthase (RefSeq), at 932,377 to 933,150 _0777 DvMF_0778: DvMF_0778 - MCP methyltransferase, CheR-type (RefSeq), at 933,286 to 934,164 _0778 Position (kb) 932 933 934Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 931.445 kb on - strand, within DvMF_0775at 931.607 kb on - strand, within DvMF_0775at 931.646 kb on + strand, within DvMF_0775at 931.838 kb on + strand, within DvMF_0776at 932.004 kb on - strand, within DvMF_0776at 932.062 kb on - strand, within DvMF_0776at 932.461 kb on - strand, within DvMF_0777at 932.461 kb on - strand, within DvMF_0777at 932.893 kb on - strand, within DvMF_0777at 933.095 kb on - strandat 933.154 kb on - strandat 933.272 kb on - strandat 933.571 kb on - strand, within DvMF_0778at 933.622 kb on + strand, within DvMF_0778at 933.842 kb on - strand, within DvMF_0778

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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931,445 - DvMF_0775 0.35 -1.7
931,607 - DvMF_0775 0.79 -0.5
931,646 + DvMF_0775 0.90 -1.4
931,838 + DvMF_0776 0.21 -0.9
932,004 - DvMF_0776 0.45 +0.5
932,062 - DvMF_0776 0.54 +2.1
932,461 - DvMF_0777 0.11 -0.5
932,461 - DvMF_0777 0.11 -1.1
932,893 - DvMF_0777 0.67 -0.7
933,095 - -1.0
933,154 - -0.7
933,272 - -1.2
933,571 - DvMF_0778 0.32 -1.6
933,622 + DvMF_0778 0.38 -0.8
933,842 - DvMF_0778 0.63 -2.9

Or see this region's nucleotide sequence