Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0663 and DvMF_0664 overlap by 4 nucleotides DvMF_0664 and DvMF_0665 are separated by 17 nucleotides
DvMF_0663: DvMF_0663 - Uncharacterized protein involved in methicillin resistance-like protein (RefSeq), at 800,340 to 801,338
_0663
DvMF_0664: DvMF_0664 - Orn/DAP/Arg decarboxylase 2 (RefSeq), at 801,335 to 802,759
_0664
DvMF_0665: DvMF_0665 - protein of unknown function DUF201 (RefSeq), at 802,777 to 803,937
_0665
Position (kb) 801
802
803 Strain fitness (log2 ratio) -2
-1
0
1
2 at 800.745 kb on + strand, within DvMF_0663 at 800.827 kb on - strand, within DvMF_0663 at 800.923 kb on + strand, within DvMF_0663 at 801.089 kb on + strand, within DvMF_0663 at 801.199 kb on - strand, within DvMF_0663 at 801.275 kb on - strand at 801.353 kb on - strand at 801.356 kb on + strand at 801.378 kb on - strand at 801.749 kb on - strand, within DvMF_0664 at 801.953 kb on + strand, within DvMF_0664 at 802.219 kb on + strand, within DvMF_0664 at 802.628 kb on - strand at 802.973 kb on - strand, within DvMF_0665 at 803.172 kb on + strand, within DvMF_0665 at 803.180 kb on - strand, within DvMF_0665 at 803.180 kb on - strand, within DvMF_0665 at 803.197 kb on - strand, within DvMF_0665 at 803.522 kb on + strand, within DvMF_0665 at 803.530 kb on - strand, within DvMF_0665
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 800,745 + DvMF_0663 0.41 -0.9 800,827 - DvMF_0663 0.49 +0.0 800,923 + DvMF_0663 0.58 -0.5 801,089 + DvMF_0663 0.75 -0.4 801,199 - DvMF_0663 0.86 -0.5 801,275 - -2.6 801,353 - -0.0 801,356 + +0.8 801,378 - -0.6 801,749 - DvMF_0664 0.29 -2.0 801,953 + DvMF_0664 0.43 -1.4 802,219 + DvMF_0664 0.62 -1.1 802,628 - -0.6 802,973 - DvMF_0665 0.17 -0.8 803,172 + DvMF_0665 0.34 +0.2 803,180 - DvMF_0665 0.35 +0.4 803,180 - DvMF_0665 0.35 +2.2 803,197 - DvMF_0665 0.36 -1.0 803,522 + DvMF_0665 0.64 +0.5 803,530 - DvMF_0665 0.65 -0.7
Or see this region's nucleotide sequence