Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0656

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0655 and DvMF_0656 are separated by 97 nucleotidesDvMF_0656 and DvMF_0657 are separated by 239 nucleotides DvMF_0655: DvMF_0655 - ABC transporter related (RefSeq), at 789,721 to 790,773 _0655 DvMF_0656: DvMF_0656 - extracellular solute-binding protein family 1 (RefSeq), at 790,871 to 792,166 _0656 DvMF_0657: DvMF_0657 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 792,406 to 793,299 _0657 Position (kb) 790 791 792 793Strain fitness (log2 ratio) -2 -1 0 1at 789.871 kb on + strand, within DvMF_0655at 789.925 kb on + strand, within DvMF_0655at 790.087 kb on - strand, within DvMF_0655at 790.140 kb on + strand, within DvMF_0655at 790.147 kb on + strand, within DvMF_0655at 790.400 kb on + strand, within DvMF_0655at 790.559 kb on - strand, within DvMF_0655at 790.578 kb on - strand, within DvMF_0655at 790.621 kb on - strand, within DvMF_0655at 790.778 kb on + strandat 790.805 kb on - strandat 791.053 kb on + strand, within DvMF_0656at 791.094 kb on + strand, within DvMF_0656at 791.278 kb on - strand, within DvMF_0656at 791.456 kb on + strand, within DvMF_0656at 791.510 kb on + strand, within DvMF_0656at 791.574 kb on - strand, within DvMF_0656at 791.621 kb on + strand, within DvMF_0656at 791.844 kb on - strand, within DvMF_0656at 792.038 kb on + strandat 792.052 kb on - strandat 792.409 kb on + strandat 792.610 kb on + strand, within DvMF_0657at 792.658 kb on + strand, within DvMF_0657at 792.686 kb on - strand, within DvMF_0657at 792.910 kb on - strand, within DvMF_0657at 793.083 kb on + strand, within DvMF_0657

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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789,871 + DvMF_0655 0.14 -0.7
789,925 + DvMF_0655 0.19 -0.9
790,087 - DvMF_0655 0.35 -1.4
790,140 + DvMF_0655 0.40 -0.6
790,147 + DvMF_0655 0.40 -0.8
790,400 + DvMF_0655 0.64 -0.1
790,559 - DvMF_0655 0.80 -0.3
790,578 - DvMF_0655 0.81 -0.7
790,621 - DvMF_0655 0.85 -0.2
790,778 + -0.7
790,805 - -0.7
791,053 + DvMF_0656 0.14 -1.1
791,094 + DvMF_0656 0.17 -0.1
791,278 - DvMF_0656 0.31 -1.8
791,456 + DvMF_0656 0.45 -1.1
791,510 + DvMF_0656 0.49 +0.3
791,574 - DvMF_0656 0.54 -0.6
791,621 + DvMF_0656 0.58 -1.6
791,844 - DvMF_0656 0.75 -0.1
792,038 + -0.4
792,052 - -0.8
792,409 + -0.2
792,610 + DvMF_0657 0.23 -0.5
792,658 + DvMF_0657 0.28 -0.5
792,686 - DvMF_0657 0.31 -0.5
792,910 - DvMF_0657 0.56 -0.6
793,083 + DvMF_0657 0.76 -0.5

Or see this region's nucleotide sequence