Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0603 and DvMF_0604 are separated by 7 nucleotides DvMF_0604 and DvMF_0605 overlap by 4 nucleotides DvMF_0605 and DvMF_0606 are separated by 214 nucleotides
DvMF_0603: DvMF_0603 - 2-oxoglutarate ferredoxin oxidoreductase subunit alpha (RefSeq), at 715,557 to 716,705
_0603
DvMF_0604: DvMF_0604 - 2-oxoglutarate ferredoxin oxidoreductase subunit beta (RefSeq), at 716,713 to 717,546
_0604
DvMF_0605: DvMF_0605 - pyruvate ferredoxin/flavodoxin oxidoreductase (RefSeq), at 717,543 to 718,166
_0605
DvMF_0606: DvMF_0606 - hypothetical protein (RefSeq), at 718,381 to 718,677
_0606
Position (kb)
716
717
718 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 715.985 kb on + strand, within DvMF_0603 at 716.127 kb on - strand, within DvMF_0603 at 716.697 kb on + strand at 716.918 kb on - strand, within DvMF_0604 at 717.096 kb on + strand, within DvMF_0604 at 717.096 kb on + strand, within DvMF_0604 at 717.128 kb on - strand, within DvMF_0604 at 717.204 kb on + strand, within DvMF_0604 at 717.204 kb on + strand, within DvMF_0604 at 717.332 kb on - strand, within DvMF_0604 at 717.401 kb on - strand, within DvMF_0604 at 717.843 kb on + strand, within DvMF_0605 at 717.857 kb on + strand, within DvMF_0605 at 717.980 kb on - strand, within DvMF_0605 at 718.057 kb on + strand, within DvMF_0605 at 718.169 kb on - strand at 718.235 kb on + strand at 718.372 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 715,985 + DvMF_0603 0.37 +0.2 716,127 - DvMF_0603 0.50 -0.6 716,697 + -5.2 716,918 - DvMF_0604 0.25 -0.7 717,096 + DvMF_0604 0.46 -1.1 717,096 + DvMF_0604 0.46 -2.0 717,128 - DvMF_0604 0.50 -3.4 717,204 + DvMF_0604 0.59 -0.5 717,204 + DvMF_0604 0.59 -1.5 717,332 - DvMF_0604 0.74 -0.5 717,401 - DvMF_0604 0.82 -0.6 717,843 + DvMF_0605 0.48 -0.9 717,857 + DvMF_0605 0.50 -0.3 717,980 - DvMF_0605 0.70 -0.3 718,057 + DvMF_0605 0.82 -0.7 718,169 - -0.3 718,235 + -0.7 718,372 + -0.8
Or see this region's nucleotide sequence