Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0530 and DvMF_0531 are separated by 159 nucleotides DvMF_0531 and DvMF_0532 are separated by 48 nucleotides DvMF_0532 and DvMF_0533 are separated by 72 nucleotides
DvMF_0530: DvMF_0530 - transcriptional regulator, AraC family (RefSeq), at 626,521 to 627,399
_0530
DvMF_0531: DvMF_0531 - hypothetical protein (RefSeq), at 627,559 to 627,981
_0531
DvMF_0532: DvMF_0532 - UbiA prenyltransferase (RefSeq), at 628,030 to 629,070
_0532
DvMF_0533: DvMF_0533 - cytochrome c oxidase, subunit II (RefSeq), at 629,143 to 630,360
_0533
Position (kb) 628
629
630 Strain fitness (log2 ratio) -1
0
1 at 627.140 kb on - strand, within DvMF_0530 at 627.971 kb on + strand at 628.131 kb on - strand at 628.164 kb on + strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532 at 628.396 kb on - strand, within DvMF_0532 at 628.431 kb on + strand, within DvMF_0532 at 628.566 kb on - strand, within DvMF_0532 at 628.567 kb on + strand, within DvMF_0532 at 628.749 kb on - strand, within DvMF_0532 at 628.913 kb on + strand, within DvMF_0532 at 628.913 kb on + strand, within DvMF_0532 at 629.186 kb on + strand at 629.209 kb on - strand at 629.222 kb on + strand at 629.648 kb on + strand, within DvMF_0533
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 627,140 - DvMF_0530 0.70 -0.3 627,971 + -1.3 628,131 - -1.4 628,164 + DvMF_0532 0.13 -0.2 628,396 - DvMF_0532 0.35 +0.2 628,396 - DvMF_0532 0.35 -0.4 628,431 + DvMF_0532 0.39 -0.3 628,566 - DvMF_0532 0.51 -0.5 628,567 + DvMF_0532 0.52 +0.2 628,749 - DvMF_0532 0.69 -1.4 628,913 + DvMF_0532 0.85 -0.3 628,913 + DvMF_0532 0.85 +1.1 629,186 + -0.5 629,209 - -0.5 629,222 + -0.4 629,648 + DvMF_0533 0.41 -1.2
Or see this region's nucleotide sequence